Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJV entry

There are 2 chains in PDB entry 3TJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16ARG 240
B
 PRO 1SER 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3TJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
163 171Right-handed alpha
Helix 3
3
A
230 240Right-handed alpha
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There are 3 sheets in PDB entry 3TJV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
136 141anti-parallel
Strand 4
A
200 203anti-parallel
Strand 5
A
206 214anti-parallel
Strand 6
B
2 3anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
222 226anti-parallel
Strand 5
A
206 214anti-parallel
Strand 6
B
2 3anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
A
41 50anti-parallel
Strand 3
A
53 56anti-parallel
Strand 4
A
105 109anti-parallel
Strand 5
A
82 91anti-parallel
Strand 6
A
63 69anti-parallel
Strand 7
A
30 36anti-parallel
Strand 8
A
41 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il