Analysis of interatomic Contacts of Structural Units in PDB entry:
3TM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TM5 entry

There are 2 chains in PDB entry 3TM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 369
B
 MET 1HIS 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3TM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 25Right-handed alpha
Helix 2
2
A
36 39Right-handed 310
Helix 3
3
A
63 72Right-handed alpha
Helix 4
4
A
94 107Right-handed alpha
Helix 5
5
A
110 114Right-handed 310
Helix 6
6
A
134 152Right-handed alpha
Helix 7
7
A
203 215Right-handed alpha
Helix 8
8
A
229 238Right-handed alpha
Helix 9
9
A
250 265Right-handed alpha
Helix 10
10
A
266 268Right-handed 310
Helix 11
11
A
276 283Right-handed 310
Helix 12
12
A
305 320Right-handed alpha
Helix 13
13
A
331 342Right-handed alpha
Helix 14
14
B
11 25Right-handed alpha
Helix 15
15
B
36 39Right-handed 310
Helix 16
16
B
63 72Right-handed alpha
Helix 17
17
B
94 108Right-handed alpha
Helix 18
18
B
134 151Right-handed alpha
Helix 19
19
B
203 214Right-handed alpha
Helix 20
20
B
229 238Right-handed alpha
Helix 21
21
B
250 264Right-handed alpha
Helix 22
22
B
266 268Right-handed 310
Helix 23
23
B
276 283Right-handed 310
Helix 24
24
B
305 320Right-handed alpha
Helix 25
25
B
331 342Right-handed alpha
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There are 6 sheets in PDB entry 3TM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
2 6anti-parallel
Strand 4
A
77 86anti-parallel
Strand 5
A
175 181anti-parallel
Strand 6
A
165 172anti-parallel
Strand 7
A
120 128parallel
Strand 8
A
157 158parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
59 62anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
244 248parallel
Strand 3
A
221 223parallel
Strand 4
A
287 293parallel
Strand 5
A
321 329parallel
Strand 6
A
357 366anti-parallel
Strand 7
A
344 354anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
2 6anti-parallel
Strand 4
B
77 86anti-parallel
Strand 5
B
175 181anti-parallel
Strand 6
B
165 172anti-parallel
Strand 7
B
120 128parallel
Strand 8
B
157 158parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
59 62anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 274first strand
Strand 2
B
244 248parallel
Strand 3
B
221 223parallel
Strand 4
B
287 293parallel
Strand 5
B
321 329parallel
Strand 6
B
357 366anti-parallel
Strand 7
B
344 354anti-parallel
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