Analysis of interatomic Contacts of Structural Units in PDB entry:
3TMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TMB entry

There are 2 chains in PDB entry 3TMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LEU 308
B
 HIS -11LYS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3TMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
42 49Right-handed alpha
Helix 3
3
A
61 77Right-handed alpha
Helix 4
4
A
84 106Right-handed alpha
Helix 5
5
A
109 130Right-handed alpha
Helix 6
6
A
132 139Right-handed alpha
Helix 7
7
A
146 165Right-handed alpha
Helix 8
8
A
169 183Right-handed alpha
Helix 9
9
A
184 188Right-handed 310
Helix 10
10
A
197 201Right-handed 310
Helix 11
11
A
202 221Right-handed alpha
Helix 12
12
A
227 237Right-handed alpha
Helix 13
13
A
250 254Right-handed 310
Helix 14
14
A
255 274Right-handed alpha
Helix 15
15
A
277 289Right-handed alpha
Helix 16
16
A
294 307Right-handed alpha
Helix 17
17
B
9 11Right-handed 310
Helix 18
18
B
42 49Right-handed alpha
Helix 19
19
B
61 77Right-handed alpha
Helix 20
20
B
84 106Right-handed alpha
Helix 21
21
B
109 130Right-handed alpha
Helix 22
22
B
132 139Right-handed alpha
Helix 23
23
B
146 166Right-handed alpha
Helix 24
24
B
169 183Right-handed alpha
Helix 25
25
B
184 188Right-handed 310
Helix 26
26
B
197 201Right-handed 310
Helix 27
27
B
202 219Right-handed alpha
Helix 28
28
B
227 237Right-handed alpha
Helix 29
29
B
250 254Right-handed 310
Helix 30
30
B
255 274Right-handed alpha
Helix 31
31
B
277 289Right-handed alpha
Helix 32
32
B
294 306Right-handed alpha
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There are 4 sheets in PDB entry 3TMB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
54 58anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
28 33anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
54 58anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
28 33anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il