Analysis of interatomic Contacts of Structural Units in PDB entry:
3TMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TMH entry

There are 10 chains in PDB entry 3TMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 375GLY 456
B
 GLY 8ARG 43
C
 ILE 3GLU 41
D
 ALA 635LEU 662
E
 LYS 375GLY 456
F
 ILE 5ARG 43
G
 PRO 7LEU 39
H
 LYS 640LEU 662
I
 LYS 375GLY 456
L
 TRP 636LEU 662
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3TMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
410 415Right-handed alpha
Helix 2
2
A
435 446Right-handed alpha
Helix 3
3
B
9 22Right-handed alpha
Helix 4
4
B
28 43Right-handed alpha
Helix 5
5
C
8 22Right-handed alpha
Helix 6
6
C
28 41Right-handed alpha
Helix 7
7
D
636 652Right-handed alpha
Helix 8
8
E
410 415Right-handed alpha
Helix 9
9
E
435 446Right-handed alpha
Helix 10
10
F
8 22Right-handed alpha
Helix 11
11
F
28 43Right-handed alpha
Helix 12
12
G
8 22Right-handed alpha
Helix 13
13
G
28 39Right-handed alpha
Helix 14
14
H
641 652Right-handed alpha
Helix 15
15
I
410 415Right-handed alpha
Helix 16
16
I
435 446Right-handed alpha
Helix 17
17
L
637 652Right-handed alpha
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There are 6 sheets in PDB entry 3TMH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 382first strand
Strand 2
A
449 455anti-parallel
Strand 3
A
422 426anti-parallel
Strand 4
A
429 430anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 403first strand
Strand 2
A
391 395anti-parallel
Strand 3
D
657 661anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
376 382first strand
Strand 2
E
449 455anti-parallel
Strand 3
E
422 426anti-parallel
Strand 4
E
429 430anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
401 403first strand
Strand 2
E
391 395anti-parallel
Strand 3
H
657 661anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
376 382first strand
Strand 2
I
449 455anti-parallel
Strand 3
I
422 426anti-parallel
Strand 4
I
429 430anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
401 403first strand
Strand 2
I
391 395anti-parallel
Strand 3
L
657 661anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il