Analysis of interatomic Contacts of Structural Units in PDB entry:
3TML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TML entry

There are 4 chains in PDB entry 3TML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	PHE 283
B	SER 0	PHE 283
C	SER 0	PHE 283
D	SER 0	PHE 283

There are 64 helices in PDB entry 3TML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	44	Right-handed alpha
Helix 2	2	A	69	84	Right-handed alpha
Helix 3	3	A	93	95	Right-handed 310
Helix 4	4	A	96	104	Right-handed alpha
Helix 5	5	A	110	114	Right-handed 310
Helix 6	6	A	116	125	Right-handed alpha
Helix 7	7	A	139	141	Right-handed 310
Helix 8	8	A	142	156	Right-handed alpha
Helix 9	9	A	181	188	Right-handed alpha
Helix 10	10	A	189	192	Right-handed 310
Helix 11	11	A	199	203	Right-handed alpha
Helix 12	12	A	218	231	Right-handed alpha
Helix 13	13	A	242	246	Right-handed 310
Helix 14	14	A	249	253	Right-handed 310
Helix 15	15	A	258	275	Right-handed alpha
Helix 16	16	A	278	283	Right-handed 310
Helix 17	17	B	25	44	Right-handed alpha
Helix 18	18	B	68	84	Right-handed alpha
Helix 19	19	B	93	95	Right-handed 310
Helix 20	20	B	96	102	Right-handed alpha
Helix 21	21	B	110	114	Right-handed 310
Helix 22	22	B	116	125	Right-handed alpha
Helix 23	23	B	139	141	Right-handed 310
Helix 24	24	B	142	157	Right-handed alpha
Helix 25	25	B	181	188	Right-handed alpha
Helix 26	26	B	189	192	Right-handed 310
Helix 27	27	B	200	204	Right-handed 310
Helix 28	28	B	218	231	Right-handed alpha
Helix 29	29	B	242	246	Right-handed 310
Helix 30	30	B	249	253	Right-handed 310
Helix 31	31	B	256	275	Right-handed alpha
Helix 32	32	B	278	283	Right-handed 310
Helix 33	33	C	25	44	Right-handed alpha
Helix 34	34	C	68	84	Right-handed alpha
Helix 35	35	C	93	95	Right-handed 310
Helix 36	36	C	96	102	Right-handed alpha
Helix 37	37	C	110	114	Right-handed 310
Helix 38	38	C	116	125	Right-handed alpha
Helix 39	39	C	139	141	Right-handed 310
Helix 40	40	C	142	157	Right-handed alpha
Helix 41	41	C	181	188	Right-handed alpha
Helix 42	42	C	189	192	Right-handed 310
Helix 43	43	C	200	204	Right-handed 310
Helix 44	44	C	218	231	Right-handed alpha
Helix 45	45	C	242	246	Right-handed 310
Helix 46	46	C	249	253	Right-handed 310
Helix 47	47	C	258	275	Right-handed alpha
Helix 48	48	C	278	283	Right-handed 310
Helix 49	49	D	25	44	Right-handed alpha
Helix 50	50	D	68	84	Right-handed alpha
Helix 51	51	D	93	95	Right-handed 310
Helix 52	52	D	96	102	Right-handed alpha
Helix 53	53	D	110	114	Right-handed 310
Helix 54	54	D	116	125	Right-handed alpha
Helix 55	55	D	139	141	Right-handed 310
Helix 56	56	D	142	157	Right-handed alpha
Helix 57	57	D	181	188	Right-handed alpha
Helix 58	58	D	189	192	Right-handed 310
Helix 59	59	D	199	203	Right-handed alpha
Helix 60	60	D	218	231	Right-handed alpha
Helix 61	61	D	242	246	Right-handed 310
Helix 62	62	D	249	253	Right-handed 310
Helix 63	63	D	258	275	Right-handed alpha
Helix 64	64	D	278	283	Right-handed 310

There are 12 sheets in PDB entry 3TML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	3	first strand
Strand 2	A	6	8	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	234	240	parallel
Strand 3	A	195	198	parallel
Strand 4	A	164	168	parallel
Strand 5	A	130	133	parallel
Strand 6	A	106	109	parallel
Strand 7	A	87	90	parallel
Strand 8	A	47	50	parallel
Strand 9	A	15	19	parallel
Strand 10	A	234	240	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	178	179	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	3	first strand
Strand 2	B	6	8	anti-parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	234	240	parallel
Strand 3	B	195	198	parallel
Strand 4	B	164	168	parallel
Strand 5	B	130	133	parallel
Strand 6	B	106	109	parallel
Strand 7	B	87	90	parallel
Strand 8	B	47	50	parallel
Strand 9	B	15	19	parallel
Strand 10	B	234	240	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	178	179	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1	3	first strand
Strand 2	C	6	8	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	234	240	parallel
Strand 3	C	195	198	parallel
Strand 4	C	164	168	parallel
Strand 5	C	130	133	parallel
Strand 6	C	106	109	parallel
Strand 7	C	87	90	parallel
Strand 8	C	47	50	parallel
Strand 9	C	15	19	parallel
Strand 10	C	234	240	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	178	179	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	3	first strand
Strand 2	D	6	8	anti-parallel

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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	255	first strand
Strand 2	D	234	240	parallel
Strand 3	D	195	198	parallel
Strand 4	D	164	168	parallel
Strand 5	D	130	133	parallel
Strand 6	D	106	109	parallel
Strand 7	D	87	90	parallel
Strand 8	D	47	50	parallel
Strand 9	D	15	19	parallel
Strand 10	D	234	240	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	178	179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TML

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TML