Analysis of interatomic Contacts of Structural Units in PDB entry:
3TNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TNE entry

There are 2 chains in PDB entry 3TNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	VAL 339
B	ASP 1	VAL 339

There are 10 helices in PDB entry 3TNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	60	64	Right-handed 310
Helix 2	2	A	122	126	Right-handed 310
Helix 3	3	A	142	150	Right-handed alpha
Helix 4	4	A	229	241	Right-handed alpha
Helix 5	5	A	305	310	Right-handed alpha
Helix 6	6	B	60	64	Right-handed 310
Helix 7	7	B	122	126	Right-handed 310
Helix 8	8	B	142	150	Right-handed alpha
Helix 9	9	B	229	241	Right-handed alpha
Helix 10	10	B	305	310	Right-handed alpha

There are 12 sheets in PDB entry 3TNE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	77	first strand
Strand 2	A	83	95	anti-parallel
Strand 3	A	14	20	anti-parallel
Strand 4	A	4	9	anti-parallel
Strand 5	A	169	174	anti-parallel
Strand 6	A	157	161	anti-parallel
Strand 7	A	312	317	anti-parallel
Strand 8	A	322	327	anti-parallel

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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	77	first strand
Strand 2	A	83	95	anti-parallel
Strand 3	A	98	111	anti-parallel
Strand 4	A	38	47	parallel
Strand 5	A	117	119	anti-parallel
Strand 6	A	25	32	parallel
Strand 7	A	14	20	anti-parallel
Strand 8	A	4	9	anti-parallel
Strand 9	A	169	174	anti-parallel
Strand 10	A	157	161	anti-parallel
Strand 11	A	312	317	anti-parallel
Strand 12	A	322	327	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	198	206	anti-parallel
Strand 3	A	265	270	anti-parallel
Strand 4	A	275	279	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	198	206	anti-parallel
Strand 3	A	216	219	anti-parallel
Strand 4	A	303	304	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	296	298	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	254	256	anti-parallel
Strand 3	A	292	294	anti-parallel
Strand 4	A	284	286	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	77	first strand
Strand 2	B	83	95	anti-parallel
Strand 3	B	14	20	anti-parallel
Strand 4	B	3	9	anti-parallel
Strand 5	B	169	174	anti-parallel
Strand 6	B	157	161	anti-parallel
Strand 7	B	312	317	anti-parallel
Strand 8	B	322	327	anti-parallel
Strand 9	B	187	190	anti-parallel

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There are 13 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	77	first strand
Strand 2	B	83	95	anti-parallel
Strand 3	B	98	111	anti-parallel
Strand 4	B	38	47	parallel
Strand 5	B	116	119	anti-parallel
Strand 6	B	25	32	parallel
Strand 7	B	14	20	anti-parallel
Strand 8	B	3	9	anti-parallel
Strand 9	B	169	174	anti-parallel
Strand 10	B	157	161	anti-parallel
Strand 11	B	312	317	anti-parallel
Strand 12	B	322	327	anti-parallel
Strand 13	B	187	190	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	336	337	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	B	265	270	anti-parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	209	219	anti-parallel
Strand 5	B	303	304	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	296	298	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	252	256	anti-parallel
Strand 3	B	291	294	anti-parallel
Strand 4	B	284	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TNE