Analysis of interatomic Contacts of Structural Units in PDB entry:
3TP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TP4 entry

There are 2 chains in PDB entry 3TP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ALA 467
B
 ASP 3LEU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3TP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
54 61Right-handed alpha
Helix 3
3
A
72 74Right-handed 310
Helix 4
4
A
86 105Right-handed alpha
Helix 5
5
A
115 118Right-handed 310
Helix 6
6
A
130 135Right-handed alpha
Helix 7
7
A
140 158Right-handed alpha
Helix 8
8
A
183 189Right-handed alpha
Helix 9
9
A
189 207Right-handed alpha
Helix 10
10
A
226 231Right-handed alpha
Helix 11
11
A
232 234Right-handed 310
Helix 12
12
A
253 275Right-handed alpha
Helix 13
13
A
298 309Right-handed alpha
Helix 14
14
A
339 349Right-handed alpha
Helix 15
15
A
354 358Right-handed 310
Helix 16
16
B
14 27Right-handed alpha
Helix 17
17
B
54 61Right-handed alpha
Helix 18
18
B
72 76Right-handed 310
Helix 19
19
B
86 105Right-handed alpha
Helix 20
20
B
115 118Right-handed 310
Helix 21
21
B
129 135Right-handed alpha
Helix 22
22
B
140 158Right-handed alpha
Helix 23
23
B
183 189Right-handed alpha
Helix 24
24
B
189 207Right-handed alpha
Helix 25
25
B
226 231Right-handed alpha
Helix 26
26
B
232 234Right-handed 310
Helix 27
27
B
253 275Right-handed alpha
Helix 28
28
B
298 310Right-handed alpha
Helix 29
29
B
339 349Right-handed alpha
Helix 30
30
B
354 358Right-handed 310
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There are 13 sheets in PDB entry 3TP4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
366 368parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
242 243parallel
Strand 3
A
213 217parallel
Strand 4
A
168 174parallel
Strand 5
A
107 113parallel
Strand 6
A
66 70parallel
Strand 7
A
32 37parallel
Strand 8
A
318 321parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
242 243parallel
Strand 3
A
213 217parallel
Strand 4
A
168 174parallel
Strand 5
A
107 113parallel
Strand 6
A
66 70parallel
Strand 7
A
32 37parallel
Strand 8
A
352 353parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 249first strand
Strand 2
A
282 285parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 379first strand
Strand 2
A
391 398anti-parallel
Strand 3
A
429 433anti-parallel
Strand 4
A
422 423anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
465 466parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 420first strand
Strand 2
A
402 411anti-parallel
Strand 3
A
446 453anti-parallel
Strand 4
A
456 463anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
366 368parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
242 243parallel
Strand 3
B
213 217parallel
Strand 4
B
168 174parallel
Strand 5
B
107 113parallel
Strand 6
B
66 70parallel
Strand 7
B
32 37parallel
Strand 8
B
318 321parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
242 243parallel
Strand 3
B
213 217parallel
Strand 4
B
168 174parallel
Strand 5
B
107 113parallel
Strand 6
B
66 70parallel
Strand 7
B
32 37parallel
Strand 8
B
352 353parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 249first strand
Strand 2
B
282 285parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 379first strand
Strand 2
B
391 398anti-parallel
Strand 3
B
429 433anti-parallel
Strand 4
B
422 423anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
456 466parallel
Strand 3
B
444 453anti-parallel
Strand 4
B
402 410anti-parallel
Strand 5
B
415 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il