Analysis of interatomic Contacts of Structural Units in PDB entry:
3TP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TP9 entry

There are 2 chains in PDB entry 3TP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ALA 471
B
 ASN -1GLU 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3TP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 46Right-handed alpha
Helix 2
2
A
64 73Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
88 94Right-handed 310
Helix 5
5
A
157 163Right-handed alpha
Helix 6
6
A
167 185Right-handed alpha
Helix 7
7
A
214 221Right-handed alpha
Helix 8
8
A
222 225Right-handed 310
Helix 9
9
A
228 238Right-handed alpha
Helix 10
10
A
246 257Right-handed alpha
Helix 11
11
A
260 265Right-handed alpha
Helix 12
12
A
273 275Right-handed 310
Helix 13
13
A
276 283Right-handed alpha
Helix 14
14
A
291 298Right-handed alpha
Helix 15
15
A
311 320Right-handed alpha
Helix 16
16
A
334 345Right-handed alpha
Helix 17
17
A
355 360Right-handed 310
Helix 18
18
A
363 365Right-handed 310
Helix 19
19
A
374 381Right-handed alpha
Helix 20
20
A
394 401Right-handed alpha
Helix 21
21
A
410 415Right-handed alpha
Helix 22
22
A
417 421Right-handed 310
Helix 23
23
A
434 448Right-handed alpha
Helix 24
24
A
457 465Right-handed alpha
Helix 25
25
B
35 45Right-handed alpha
Helix 26
26
B
64 72Right-handed alpha
Helix 27
27
B
83 87Right-handed 310
Helix 28
28
B
88 94Right-handed 310
Helix 29
29
B
157 162Right-handed alpha
Helix 30
30
B
167 185Right-handed alpha
Helix 31
31
B
214 221Right-handed alpha
Helix 32
32
B
222 226Right-handed 310
Helix 33
33
B
228 238Right-handed alpha
Helix 34
34
B
246 257Right-handed alpha
Helix 35
35
B
260 265Right-handed alpha
Helix 36
36
B
273 275Right-handed 310
Helix 37
37
B
276 283Right-handed alpha
Helix 38
38
B
291 298Right-handed alpha
Helix 39
39
B
311 320Right-handed alpha
Helix 40
40
B
334 345Right-handed alpha
Helix 41
41
B
355 360Right-handed 310
Helix 42
42
B
363 365Right-handed 310
Helix 43
43
B
374 384Right-handed alpha
Helix 44
44
B
394 400Right-handed alpha
Helix 45
45
B
410 415Right-handed alpha
Helix 46
46
B
417 421Right-handed 310
Helix 47
47
B
434 448Right-handed alpha
Helix 48
48
B
457 465Right-handed alpha
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There are 11 sheets in PDB entry 3TP9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 8first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
48 53parallel
Strand 5
A
75 79parallel
Strand 6
A
96 99parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
110 116anti-parallel
Strand 3
A
125 131anti-parallel
Strand 4
A
135 145anti-parallel
Strand 5
A
191 194parallel
Strand 6
A
212 213anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
152 153anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
350 354parallel
Strand 3
A
326 329parallel
Strand 4
A
285 288parallel
Strand 5
A
304 305parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
367 368anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 373first strand
Strand 2
A
452 455parallel
Strand 3
A
427 430parallel
Strand 4
A
388 391parallel
Strand 5
A
407 408parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 8first strand
Strand 2
B
13 20anti-parallel
Strand 3
B
25 29anti-parallel
Strand 4
B
48 53parallel
Strand 5
B
75 79parallel
Strand 6
B
96 99parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
110 116anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
135 145anti-parallel
Strand 5
B
191 194parallel
Strand 6
B
212 213anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
350 354parallel
Strand 3
B
326 329parallel
Strand 4
B
285 288parallel
Strand 5
B
304 305parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
367 368anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 373first strand
Strand 2
B
452 455parallel
Strand 3
B
427 430parallel
Strand 4
B
388 391parallel
Strand 5
B
407 408parallel
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