Analysis of interatomic Contacts of Structural Units in PDB entry:
3TPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TPF entry

There are 5 chains in PDB entry 3TPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 303
B
 GLY 0GLY 304
C
 MSE 1ARG 303
D
 MSE 1ARG 303
E
 MSE 1VAL 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 94 helices in PDB entry 3TPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
11 28Right-handed alpha
Helix 3
3
A
46 60Right-handed alpha
Helix 4
4
A
79 91Right-handed alpha
Helix 5
5
A
100 111Right-handed alpha
Helix 6
6
A
124 138Right-handed alpha
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
155 169Right-handed alpha
Helix 9
9
A
183 198Right-handed alpha
Helix 10
10
A
206 212Right-handed alpha
Helix 11
11
A
226 229Right-handed 310
Helix 12
12
A
230 238Right-handed alpha
Helix 13
13
A
239 242Right-handed 310
Helix 14
14
A
244 251Right-handed alpha
Helix 15
15
A
270 277Right-handed alpha
Helix 16
16
A
277 302Right-handed alpha
Helix 17
17
B
6 10Right-handed 310
Helix 18
18
B
11 28Right-handed alpha
Helix 19
19
B
46 60Right-handed alpha
Helix 20
20
B
79 91Right-handed alpha
Helix 21
21
B
100 111Right-handed alpha
Helix 22
22
B
124 138Right-handed alpha
Helix 23
23
B
141 145Right-handed 310
Helix 24
24
B
155 169Right-handed alpha
Helix 25
25
B
183 198Right-handed alpha
Helix 26
26
B
206 212Right-handed alpha
Helix 27
27
B
226 229Right-handed 310
Helix 28
28
B
230 238Right-handed alpha
Helix 29
29
B
239 242Right-handed 310
Helix 30
30
B
244 251Right-handed alpha
Helix 31
31
B
270 277Right-handed alpha
Helix 32
32
B
277 302Right-handed alpha
Helix 33
33
C
6 10Right-handed 310
Helix 34
34
C
11 28Right-handed alpha
Helix 35
35
C
46 60Right-handed alpha
Helix 36
36
C
79 91Right-handed alpha
Helix 37
37
C
100 111Right-handed alpha
Helix 38
38
C
124 138Right-handed alpha
Helix 39
39
C
141 145Right-handed 310
Helix 40
40
C
155 169Right-handed alpha
Helix 41
41
C
183 198Right-handed alpha
Helix 42
42
C
206 212Right-handed alpha
Helix 43
43
C
232 238Right-handed alpha
Helix 44
44
C
239 242Right-handed 310
Helix 45
45
C
244 251Right-handed alpha
Helix 46
46
C
270 277Right-handed alpha
Helix 47
47
C
277 302Right-handed alpha
Helix 48
48
D
6 10Right-handed 310
Helix 49
49
D
11 28Right-handed alpha
Helix 50
50
D
46 60Right-handed alpha
Helix 51
51
D
79 91Right-handed alpha
Helix 52
52
D
100 111Right-handed alpha
Helix 53
53
D
124 138Right-handed alpha
Helix 54
54
D
141 145Right-handed 310
Helix 55
55
D
155 169Right-handed alpha
Helix 56
56
D
183 198Right-handed alpha
Helix 57
57
D
206 212Right-handed alpha
Helix 58
58
D
226 229Right-handed 310
Helix 59
59
D
230 238Right-handed alpha
Helix 60
60
D
239 242Right-handed 310
Helix 61
61
D
244 251Right-handed alpha
Helix 62
62
D
270 277Right-handed alpha
Helix 63
63
D
277 302Right-handed alpha
Helix 64
64
E
6 10Right-handed 310
Helix 65
65
E
11 28Right-handed alpha
Helix 66
66
E
46 60Right-handed alpha
Helix 67
67
E
79 91Right-handed alpha
Helix 68
68
E
100 111Right-handed alpha
Helix 69
69
E
124 138Right-handed alpha
Helix 70
70
E
141 145Right-handed 310
Helix 71
71
E
155 169Right-handed alpha
Helix 72
72
E
183 198Right-handed alpha
Helix 73
73
E
206 212Right-handed alpha
Helix 74
74
E
232 238Right-handed alpha
Helix 75
75
E
239 242Right-handed 310
Helix 76
76
E
244 251Right-handed alpha
Helix 77
77
E
270 277Right-handed alpha
Helix 78
78
E
277 302Right-handed alpha
Helix 79
79
F
6 10Right-handed 310
Helix 80
80
F
11 28Right-handed alpha
Helix 81
81
F
46 60Right-handed alpha
Helix 82
82
F
79 91Right-handed alpha
Helix 83
83
F
100 111Right-handed alpha
Helix 84
84
F
124 138Right-handed alpha
Helix 85
85
F
141 145Right-handed 310
Helix 86
86
F
155 169Right-handed alpha
Helix 87
87
F
183 198Right-handed alpha
Helix 88
88
F
206 212Right-handed alpha
Helix 89
89
F
227 229Right-handed 310
Helix 90
90
F
230 238Right-handed alpha
Helix 91
91
F
239 242Right-handed 310
Helix 92
92
F
244 251Right-handed alpha
Helix 93
93
F
270 277Right-handed alpha
Helix 94
94
F
277 302Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3TPF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
37 42parallel
Strand 3
A
93 97parallel
Strand 4
A
115 117parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
171 175parallel
Strand 3
A
147 151parallel
Strand 4
A
216 219parallel
Strand 5
A
256 259parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
37 42parallel
Strand 3
B
93 97parallel
Strand 4
B
115 117parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 204first strand
Strand 2
B
171 175parallel
Strand 3
B
147 151parallel
Strand 4
B
216 219parallel
Strand 5
B
256 259parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 67first strand
Strand 2
C
37 42parallel
Strand 3
C
93 97parallel
Strand 4
C
115 119parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 204first strand
Strand 2
C
171 175parallel
Strand 3
C
147 151parallel
Strand 4
C
216 219parallel
Strand 5
C
256 259parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 67first strand
Strand 2
D
37 42parallel
Strand 3
D
93 97parallel
Strand 4
D
115 117parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 204first strand
Strand 2
D
171 175parallel
Strand 3
D
147 151parallel
Strand 4
D
216 219parallel
Strand 5
D
256 259parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
63 67first strand
Strand 2
E
37 42parallel
Strand 3
E
93 97parallel
Strand 4
E
115 119parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
200 204first strand
Strand 2
E
171 175parallel
Strand 3
E
147 151parallel
Strand 4
E
216 219parallel
Strand 5
E
256 259parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
63 67first strand
Strand 2
F
37 42parallel
Strand 3
F
93 97parallel
Strand 4
F
115 117parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
200 204first strand
Strand 2
F
171 175parallel
Strand 3
F
147 151parallel
Strand 4
F
216 219parallel
Strand 5
F
256 259parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il