Analysis of interatomic Contacts of Structural Units in PDB entry:
3TQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TQL entry

There is 1 chain in PDB entry 3TQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 40PHE 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3TQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 78Right-handed alpha
Helix 2
2
A
88 90Right-handed 310
Helix 3
3
A
91 98Right-handed alpha
Helix 4
4
A
113 116Right-handed 310
Helix 5
5
A
157 168Right-handed alpha
Helix 6
6
A
169 171Right-handed 310
Helix 7
7
A
178 187Right-handed alpha
Helix 8
8
A
197 208Right-handed alpha
Helix 9
9
A
222 226Right-handed 310
Helix 10
10
A
238 255Right-handed alpha
Helix 11
11
A
256 266Right-handed alpha
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There are 3 sheets in PDB entry 3TQL. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
42 47parallel
Strand 3
A
103 104parallel
Strand 4
A
233 235anti-parallel
Strand 5
A
118 120anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
63 64anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
150 154parallel
Strand 3
A
193 195parallel
Strand 4
A
128 134anti-parallel
Strand 5
A
213 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il