Analysis of interatomic Contacts of Structural Units in PDB entry:
3TQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TQO entry

There is 1 chain in PDB entry 3TQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1LEU 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3TQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 58Right-handed alpha
Helix 2
2
A
72 82Right-handed alpha
Helix 3
3
A
85 105Right-handed alpha
Helix 4
4
A
114 117Right-handed 310
Helix 5
5
A
118 132Right-handed alpha
Helix 6
6
A
205 219Right-handed alpha
Helix 7
7
A
230 232Right-handed 310
Helix 8
8
A
234 248Right-handed alpha
Helix 9
9
A
277 285Right-handed alpha
Helix 10
10
A
286 297Right-handed alpha
Helix 11
11
A
306 325Right-handed alpha
Helix 12
12
A
337 347Right-handed alpha
Helix 13
13
A
351 372Right-handed alpha
Helix 14
14
A
374 390Right-handed alpha
Helix 15
15
A
391 393Right-handed 310
Helix 16
16
A
398 403Right-handed alpha
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There are 4 sheets in PDB entry 3TQO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
12 15anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
23 28parallel
Strand 3
A
222 228parallel
Strand 4
A
252 258parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
143 145anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
202 204anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
261 263anti-parallel
Strand 3
A
303 305parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il