Analysis of interatomic Contacts of Structural Units in PDB entry:
3TQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TQP entry

There are 2 chains in PDB entry 3TQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASN 426
B
 THR 2PHE 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3TQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 63Right-handed 310
Helix 2
2
A
65 74Right-handed alpha
Helix 3
3
A
74 81Right-handed alpha
Helix 4
4
A
87 100Right-handed alpha
Helix 5
5
A
108 127Right-handed alpha
Helix 6
6
A
130 137Right-handed alpha
Helix 7
7
A
176 198Right-handed alpha
Helix 8
8
A
216 231Right-handed alpha
Helix 9
9
A
246 249Right-handed 310
Helix 10
10
A
264 279Right-handed alpha
Helix 11
11
A
292 304Right-handed alpha
Helix 12
12
A
318 328Right-handed alpha
Helix 13
13
A
337 342Right-handed alpha
Helix 14
14
A
343 357Right-handed alpha
Helix 15
15
A
373 382Right-handed alpha
Helix 16
16
A
394 412Right-handed alpha
Helix 17
17
A
418 423Right-handed 310
Helix 18
18
B
59 63Right-handed 310
Helix 19
19
B
65 74Right-handed alpha
Helix 20
20
B
74 81Right-handed alpha
Helix 21
21
B
87 100Right-handed alpha
Helix 22
22
B
108 127Right-handed alpha
Helix 23
23
B
130 137Right-handed alpha
Helix 24
24
B
176 198Right-handed alpha
Helix 25
25
B
217 231Right-handed alpha
Helix 26
26
B
246 251Right-handed 310
Helix 27
27
B
264 279Right-handed alpha
Helix 28
28
B
292 304Right-handed alpha
Helix 29
29
B
318 328Right-handed alpha
Helix 30
30
B
337 342Right-handed alpha
Helix 31
31
B
343 357Right-handed alpha
Helix 32
32
B
373 382Right-handed alpha
Helix 33
33
B
394 412Right-handed alpha
Helix 34
34
B
413 415Right-handed 310
Helix 35
35
B
418 423Right-handed 310
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There are 6 sheets in PDB entry 3TQP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 14first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
33 37anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 153first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
281 285parallel
Strand 5
A
308 311parallel
Strand 6
A
333 336parallel
Strand 7
A
360 364parallel
Strand 8
A
385 388parallel
Strand 9
A
146 153parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
255 256anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 14first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
33 37anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
386 388parallel
Strand 3
B
360 364parallel
Strand 4
B
333 336parallel
Strand 5
B
308 311parallel
Strand 6
B
281 285parallel
Strand 7
B
240 244parallel
Strand 8
B
166 170anti-parallel
Strand 9
B
149 153anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
208 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il