Analysis of interatomic Contacts of Structural Units in PDB entry:
3TQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TQQ entry

There is 1 chain in PDB entry 3TQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3TQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
14 24Right-handed alpha
Helix 3
3
A
48 57Right-handed alpha
Helix 4
4
A
69 78Right-handed alpha
Helix 5
5
A
94 99Right-handed alpha
Helix 6
6
A
120 129Right-handed alpha
Helix 7
7
A
162 188Right-handed alpha
Helix 8
8
A
196 200Right-handed 310
Helix 9
9
A
207 212Right-handed 310
Helix 10
10
A
218 229Right-handed alpha
Helix 11
11
A
295 303Right-handed alpha
Helix 12
12
A
304 306Right-handed 310
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There are 3 sheets in PDB entry 3TQQ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
27 32parallel
Strand 3
A
4 9parallel
Strand 4
A
83 87parallel
Strand 5
A
105 109parallel
Strand 6
A
132 139anti-parallel
Strand 7
A
149 156anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
242 252anti-parallel
Strand 3
A
279 286anti-parallel
Strand 4
A
270 274anti-parallel
Strand 5
A
263 267anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
242 252anti-parallel
Strand 3
A
279 286anti-parallel
Strand 4
A
293 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il