Analysis of interatomic Contacts of Structural Units in PDB entry:
3TQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TQV entry

There are 2 chains in PDB entry 3TQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7GLN 286
B
 ASN 7GLN 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3TQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 32Right-handed alpha
Helix 2
2
A
35 41Right-handed 310
Helix 3
3
A
60 72Right-handed alpha
Helix 4
4
A
100 132Right-handed alpha
Helix 5
5
A
148 159Right-handed alpha
Helix 6
6
A
185 196Right-handed alpha
Helix 7
7
A
207 217Right-handed alpha
Helix 8
8
A
228 240Right-handed alpha
Helix 9
9
A
255 261Right-handed alpha
Helix 10
10
A
270 275Right-handed alpha
Helix 11
11
B
15 32Right-handed alpha
Helix 12
12
B
37 41Right-handed 310
Helix 13
13
B
60 72Right-handed alpha
Helix 14
14
B
100 131Right-handed alpha
Helix 15
15
B
148 159Right-handed alpha
Helix 16
16
B
175 181Right-handed alpha
Helix 17
17
B
184 196Right-handed alpha
Helix 18
18
B
207 217Right-handed alpha
Helix 19
19
B
228 240Right-handed alpha
Helix 20
20
B
255 261Right-handed alpha
Helix 21
21
B
270 275Right-handed alpha
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There are 6 sheets in PDB entry 3TQV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
92 99anti-parallel
Strand 3
A
45 52anti-parallel
Strand 4
A
281 285anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
86 87anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
266 268parallel
Strand 3
A
244 248parallel
Strand 4
A
221 225parallel
Strand 5
A
201 205parallel
Strand 6
A
172 174parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
92 99anti-parallel
Strand 3
B
45 52anti-parallel
Strand 4
B
281 285anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
86 87anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
266 268parallel
Strand 3
B
244 248parallel
Strand 4
B
221 225parallel
Strand 5
B
200 205parallel
Strand 6
B
171 174parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il