Analysis of interatomic Contacts of Structural Units in PDB entry:
3TR5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TR5 entry

There are 3 chains in PDB entry 3TR5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	HIS 525
B	VAL 3	HIS 525
C	VAL 3	LEU 243

There are 75 helices in PDB entry 3TR5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	9	Right-handed alpha
Helix 2	2	A	22	34	Right-handed alpha
Helix 3	3	A	36	45	Right-handed alpha
Helix 4	4	A	52	64	Right-handed alpha
Helix 5	5	A	93	99	Right-handed alpha
Helix 6	6	A	100	103	Right-handed 310
Helix 7	7	A	117	129	Right-handed alpha
Helix 8	8	A	147	160	Right-handed alpha
Helix 9	9	A	172	176	Right-handed 310
Helix 10	10	A	209	217	Right-handed alpha
Helix 11	11	A	217	234	Right-handed alpha
Helix 12	12	A	238	244	Right-handed alpha
Helix 13	13	A	254	258	Right-handed 310
Helix 14	14	A	260	272	Right-handed alpha
Helix 15	15	A	401	403	Right-handed 310
Helix 16	16	A	404	418	Right-handed alpha
Helix 17	17	A	439	454	Right-handed alpha
Helix 18	18	A	474	485	Right-handed alpha
Helix 19	19	A	503	514	Right-handed alpha
Helix 20	20	B	4	9	Right-handed alpha
Helix 21	21	B	22	34	Right-handed alpha
Helix 22	22	B	36	45	Right-handed alpha
Helix 23	23	B	52	63	Right-handed alpha
Helix 24	24	B	93	99	Right-handed alpha
Helix 25	25	B	100	103	Right-handed 310
Helix 26	26	B	117	129	Right-handed alpha
Helix 27	27	B	147	159	Right-handed alpha
Helix 28	28	B	172	176	Right-handed 310
Helix 29	29	B	209	217	Right-handed alpha
Helix 30	30	B	217	234	Right-handed alpha
Helix 31	31	B	238	244	Right-handed alpha
Helix 32	32	B	254	258	Right-handed 310
Helix 33	33	B	260	272	Right-handed alpha
Helix 34	34	B	401	403	Right-handed 310
Helix 35	35	B	404	418	Right-handed alpha
Helix 36	36	B	439	454	Right-handed alpha
Helix 37	37	B	474	486	Right-handed alpha
Helix 38	38	B	503	514	Right-handed alpha
Helix 39	39	C	4	9	Right-handed alpha
Helix 40	40	C	22	35	Right-handed alpha
Helix 41	41	C	36	44	Right-handed alpha
Helix 42	42	C	52	60	Right-handed alpha
Helix 43	43	C	93	100	Right-handed alpha
Helix 44	44	C	101	103	Right-handed 310
Helix 45	45	C	117	129	Right-handed alpha
Helix 46	46	C	147	159	Right-handed alpha
Helix 47	47	C	209	217	Right-handed alpha
Helix 48	48	C	217	234	Right-handed alpha
Helix 49	49	C	238	244	Right-handed alpha
Helix 50	50	C	254	258	Right-handed 310
Helix 51	51	C	260	272	Right-handed alpha
Helix 52	52	C	401	403	Right-handed 310
Helix 53	53	C	404	418	Right-handed alpha
Helix 54	54	C	439	454	Right-handed alpha
Helix 55	55	C	474	486	Right-handed alpha
Helix 56	56	C	503	514	Right-handed alpha
Helix 57	57	D	4	9	Right-handed alpha
Helix 58	58	D	22	34	Right-handed alpha
Helix 59	59	D	36	44	Right-handed alpha
Helix 60	60	D	52	63	Right-handed alpha
Helix 61	61	D	66	69	Right-handed 310
Helix 62	62	D	93	99	Right-handed alpha
Helix 63	63	D	100	103	Right-handed 310
Helix 64	64	D	117	129	Right-handed alpha
Helix 65	65	D	147	159	Right-handed alpha
Helix 66	66	D	172	176	Right-handed 310
Helix 67	67	D	209	217	Right-handed alpha
Helix 68	68	D	217	234	Right-handed alpha
Helix 69	69	D	238	244	Right-handed alpha
Helix 70	70	D	260	272	Right-handed alpha
Helix 71	71	D	401	403	Right-handed 310
Helix 72	72	D	404	418	Right-handed alpha
Helix 73	73	D	439	454	Right-handed alpha
Helix 74	74	D	474	486	Right-handed alpha
Helix 75	75	D	503	514	Right-handed alpha

There are 27 sheets in PDB entry 3TR5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	10	17	parallel
Strand 4	A	105	111	parallel
Strand 5	A	134	139	parallel
Strand 6	A	247	252	parallel
Strand 7	A	162	165	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	178	181	anti-parallel
Strand 3	A	186	189	anti-parallel
Strand 4	A	203	205	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	338	first strand
Strand 2	A	325	329	anti-parallel
Strand 3	A	374	376	anti-parallel
Strand 4	A	293	301	anti-parallel
Strand 5	A	310	318	anti-parallel
Strand 6	A	360	365	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	354	355	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	522	524	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	460	first strand
Strand 2	A	393	399	anti-parallel
Strand 3	A	432	436	anti-parallel
Strand 4	A	422	426	anti-parallel
Strand 5	A	489	492	anti-parallel
Strand 6	A	497	501	anti-parallel
Strand 7	A	466	471	anti-parallel
Strand 8	A	518	520	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	76	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	10	17	parallel
Strand 4	B	105	111	parallel
Strand 5	B	134	139	parallel
Strand 6	B	247	252	parallel
Strand 7	B	162	165	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	170	first strand
Strand 2	B	178	181	anti-parallel
Strand 3	B	186	189	anti-parallel
Strand 4	B	203	205	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	284	285	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	338	first strand
Strand 2	B	325	329	anti-parallel
Strand 3	B	374	376	anti-parallel
Strand 4	B	293	301	anti-parallel
Strand 5	B	310	318	anti-parallel
Strand 6	B	360	365	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	354	355	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	522	524	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	460	first strand
Strand 2	B	393	399	anti-parallel
Strand 3	B	432	436	anti-parallel
Strand 4	B	422	426	anti-parallel
Strand 5	B	489	492	anti-parallel
Strand 6	B	497	501	anti-parallel
Strand 7	B	466	471	anti-parallel
Strand 8	B	518	520	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	76	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	10	16	parallel
Strand 4	C	105	111	parallel
Strand 5	C	134	139	parallel
Strand 6	C	247	252	parallel
Strand 7	C	162	165	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	170	first strand
Strand 2	C	178	181	anti-parallel
Strand 3	C	186	189	anti-parallel
Strand 4	C	203	205	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	284	285	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	338	first strand
Strand 2	C	325	329	anti-parallel
Strand 3	C	374	376	anti-parallel
Strand 4	C	293	301	anti-parallel
Strand 5	C	310	318	anti-parallel
Strand 6	C	360	365	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	354	355	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	389	first strand
Strand 2	C	522	524	anti-parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	461	first strand
Strand 2	C	393	399	anti-parallel
Strand 3	C	432	436	anti-parallel
Strand 4	C	422	426	anti-parallel
Strand 5	C	489	492	anti-parallel
Strand 6	C	497	501	anti-parallel
Strand 7	C	466	471	anti-parallel
Strand 8	C	518	520	anti-parallel

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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	76	first strand
Strand 2	D	79	84	anti-parallel
Strand 3	D	10	17	parallel
Strand 4	D	105	111	parallel
Strand 5	D	134	139	parallel
Strand 6	D	247	252	parallel
Strand 7	D	162	165	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	178	181	anti-parallel
Strand 3	D	186	189	anti-parallel
Strand 4	D	203	205	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	284	285	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	338	first strand
Strand 2	D	325	329	anti-parallel
Strand 3	D	374	376	anti-parallel
Strand 4	D	293	301	anti-parallel
Strand 5	D	310	318	anti-parallel
Strand 6	D	360	365	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	322	first strand
Strand 2	D	354	355	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	389	first strand
Strand 2	D	522	524	anti-parallel

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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	461	first strand
Strand 2	D	393	398	anti-parallel
Strand 3	D	433	436	anti-parallel
Strand 4	D	422	426	anti-parallel
Strand 5	D	489	492	anti-parallel
Strand 6	D	497	501	anti-parallel
Strand 7	D	466	471	anti-parallel
Strand 8	D	518	520	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TR5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TR5