Analysis of interatomic Contacts of Structural Units in PDB entry:
3TS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TS8 entry

There are 6 chains in PDB entry 3TS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 94THR 356
B
 SER 94THR 356
C
 SER 94THR 356
D
 SER 94THR 356
K
 A 3 A 28
L
 C 27 T 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3TS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 108Right-handed 310
Helix 2
2
A
176 181Right-handed alpha
Helix 3
3
A
277 322Right-handed alpha
Helix 4
4
A
334 350Right-handed alpha
Helix 5
5
B
176 182Right-handed alpha
Helix 6
6
B
277 321Right-handed alpha
Helix 7
7
B
334 341Right-handed alpha
Helix 8
8
B
345 349Right-handed 310
Helix 9
9
C
176 181Right-handed alpha
Helix 10
10
C
277 291Right-handed alpha
Helix 11
11
C
334 354Right-handed alpha
Helix 12
12
D
104 108Right-handed 310
Helix 13
13
D
176 181Right-handed alpha
Helix 14
14
D
277 322Right-handed alpha
Helix 15
15
D
336 344Right-handed alpha
Helix 16
16
D
344 349Right-handed alpha
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There are 11 sheets in PDB entry 3TS8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
195 198anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
264 274parallel
Strand 4
A
251 258anti-parallel
Strand 5
A
156 163anti-parallel
Strand 6
A
214 219anti-parallel
Strand 7
A
204 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 333first strand
Strand 2
C
327 333anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
143 146anti-parallel
Strand 3
B
230 232anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
132 135anti-parallel
Strand 3
B
271 274parallel
Strand 4
B
251 258anti-parallel
Strand 5
B
156 162anti-parallel
Strand 6
B
214 219anti-parallel
Strand 7
B
204 207anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
234 236anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 333first strand
Strand 2
D
327 329anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 112first strand
Strand 2
C
141 146anti-parallel
Strand 3
C
230 236anti-parallel
Strand 4
C
195 197anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 127first strand
Strand 2
C
132 135anti-parallel
Strand 3
C
264 274parallel
Strand 4
C
251 258anti-parallel
Strand 5
C
156 163anti-parallel
Strand 6
C
214 219anti-parallel
Strand 7
C
204 207anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 112first strand
Strand 2
D
141 146anti-parallel
Strand 3
D
230 236anti-parallel
Strand 4
D
195 198anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 126first strand
Strand 2
D
132 135anti-parallel
Strand 3
D
264 274parallel
Strand 4
D
251 258anti-parallel
Strand 5
D
156 163anti-parallel
Strand 6
D
214 219anti-parallel
Strand 7
D
204 207anti-parallel
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