Analysis of interatomic Contacts of Structural Units in PDB entry:
3TSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TSD entry

There are 2 chains in PDB entry 3TSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -3PRO 473
B
 THR -9HIS 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3TSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 4Right-handed alpha
Helix 2
2
A
12 14Right-handed 310
Helix 3
3
A
56 66Right-handed alpha
Helix 4
4
A
77 91Right-handed alpha
Helix 5
5
A
107 119Right-handed alpha
Helix 6
6
A
140 144Right-handed alpha
Helix 7
7
A
170 182Right-handed alpha
Helix 8
8
A
201 210Right-handed alpha
Helix 9
9
A
232 244Right-handed alpha
Helix 10
10
A
257 271Right-handed alpha
Helix 11
11
A
283 293Right-handed alpha
Helix 12
12
A
309 315Right-handed alpha
Helix 13
13
A
319 332Right-handed alpha
Helix 14
14
A
333 335Right-handed 310
Helix 15
15
A
346 356Right-handed alpha
Helix 16
16
A
364 368Right-handed 310
Helix 17
17
A
427 446Right-handed alpha
Helix 18
18
A
450 458Right-handed alpha
Helix 19
19
A
464 472Right-handed alpha
Helix 20
20
B
-8 -4Right-handed 310
Helix 21
21
B
-1 4Right-handed alpha
Helix 22
22
B
12 14Right-handed 310
Helix 23
23
B
56 66Right-handed alpha
Helix 24
24
B
77 90Right-handed alpha
Helix 25
25
B
114 119Right-handed alpha
Helix 26
26
B
141 144Right-handed 310
Helix 27
27
B
152 157Right-handed alpha
Helix 28
28
B
170 182Right-handed alpha
Helix 29
29
B
201 210Right-handed alpha
Helix 30
30
B
232 243Right-handed alpha
Helix 31
31
B
257 271Right-handed alpha
Helix 32
32
B
283 294Right-handed alpha
Helix 33
33
B
309 314Right-handed alpha
Helix 34
34
B
319 332Right-handed alpha
Helix 35
35
B
333 335Right-handed 310
Helix 36
36
B
346 356Right-handed alpha
Helix 37
37
B
427 446Right-handed alpha
Helix 38
38
B
450 458Right-handed alpha
Helix 39
39
B
464 470Right-handed alpha
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There are 11 sheets in PDB entry 3TSD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
460 462anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
40 42anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
69 72parallel
Strand 3
A
224 227parallel
Strand 4
A
247 251parallel
Strand 5
A
275 281parallel
Strand 6
A
297 300parallel
Strand 7
A
338 341parallel
Strand 8
A
360 363parallel
Strand 9
A
46 48parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
134 139anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
185 189parallel
Strand 3
A
195 200anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
460 462anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
40 42anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
69 72parallel
Strand 3
B
224 227parallel
Strand 4
B
247 251parallel
Strand 5
B
275 281parallel
Strand 6
B
297 300parallel
Strand 7
B
338 341parallel
Strand 8
B
360 363parallel
Strand 9
B
46 48parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
138 139anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
185 189parallel
Strand 3
B
195 200anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 389first strand
Strand 2
B
419 423anti-parallel
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