Analysis of interatomic Contacts of Structural Units in PDB entry:
3TSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TSM entry

There are 2 chains in PDB entry 3TSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4GLY 264
B
 ILE 5GLY 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3TSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 35Right-handed alpha
Helix 2
2
A
41 52Right-handed alpha
Helix 3
3
A
76 87Right-handed alpha
Helix 4
4
A
104 114Right-handed alpha
Helix 5
5
A
128 137Right-handed alpha
Helix 6
6
A
150 164Right-handed alpha
Helix 7
7
A
174 182Right-handed alpha
Helix 8
8
A
203 213Right-handed alpha
Helix 9
9
A
227 236Right-handed alpha
Helix 10
10
A
245 250Right-handed alpha
Helix 11
11
A
253 264Right-handed alpha
Helix 12
12
B
6 35Right-handed alpha
Helix 13
13
B
41 52Right-handed alpha
Helix 14
14
B
76 87Right-handed alpha
Helix 15
15
B
104 114Right-handed alpha
Helix 16
16
B
128 137Right-handed alpha
Helix 17
17
B
150 164Right-handed alpha
Helix 18
18
B
174 182Right-handed alpha
Helix 19
19
B
203 211Right-handed alpha
Helix 20
20
B
227 236Right-handed alpha
Helix 21
21
B
245 250Right-handed alpha
Helix 22
22
B
253 264Right-handed alpha
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There are 4 sheets in PDB entry 3TSM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
91 95parallel
Strand 3
A
119 122parallel
Strand 4
A
141 145parallel
Strand 5
A
167 172parallel
Strand 6
A
188 192parallel
Strand 7
A
218 222parallel
Strand 8
A
241 244parallel
Strand 9
A
56 61parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
69 70anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
91 95parallel
Strand 3
B
119 122parallel
Strand 4
B
141 145parallel
Strand 5
B
167 172parallel
Strand 6
B
188 192parallel
Strand 7
B
218 222parallel
Strand 8
B
241 244parallel
Strand 9
B
56 61parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
69 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il