Analysis of interatomic Contacts of Structural Units in PDB entry:
3TSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TSY entry

There is 1 chain in PDB entry 3TSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 45THR 978
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3TSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 68Right-handed alpha
Helix 2
2
A
70 74Right-handed 310
Helix 3
3
A
91 108Right-handed alpha
Helix 4
4
A
123 137Right-handed alpha
Helix 5
5
A
148 160Right-handed alpha
Helix 6
6
A
174 180Right-handed alpha
Helix 7
7
A
204 206Right-handed 310
Helix 8
8
A
211 217Right-handed 310
Helix 9
9
A
247 259Right-handed alpha
Helix 10
10
A
281 288Right-handed alpha
Helix 11
11
A
288 296Right-handed alpha
Helix 12
12
A
306 318Right-handed alpha
Helix 13
13
A
325 335Right-handed alpha
Helix 14
14
A
336 340Right-handed 310
Helix 15
15
A
359 368Right-handed alpha
Helix 16
16
A
380 383Right-handed 310
Helix 17
17
A
389 393Right-handed 310
Helix 18
18
A
446 454Right-handed alpha
Helix 19
19
A
590 599Right-handed alpha
Helix 20
20
A
620 631Right-handed alpha
Helix 21
21
A
636 650Right-handed alpha
Helix 22
22
A
660 667Right-handed alpha
Helix 23
23
A
667 672Right-handed alpha
Helix 24
24
A
677 705Right-handed alpha
Helix 25
25
A
707 711Right-handed 310
Helix 26
26
A
726 736Right-handed alpha
Helix 27
27
A
752 767Right-handed alpha
Helix 28
28
A
792 802Right-handed alpha
Helix 29
29
A
857 875Right-handed alpha
Helix 30
30
A
876 878Right-handed 310
Helix 31
31
A
881 885Right-handed 310
Helix 32
32
A
893 905Right-handed alpha
Helix 33
33
A
911 922Right-handed alpha
Helix 34
34
A
926 943Right-handed alpha
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There are 9 sheets in PDB entry 3TSY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
298 301parallel
Strand 4
A
272 275parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
115 119parallel
Strand 3
A
161 166parallel
Strand 4
A
184 187parallel
Strand 5
A
200 202parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
243 246anti-parallel
Strand 3
A
442 443anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
348 351parallel
Strand 3
A
372 375parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
385 388anti-parallel
Strand 3
A
406 407anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 416first strand
Strand 2
A
430 435anti-parallel
Strand 3
A
460 468anti-parallel
Strand 4
A
474 479anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 747first strand
Strand 2
A
713 718parallel
Strand 3
A
772 779parallel
Strand 4
A
805 812anti-parallel
Strand 5
A
604 612anti-parallel
Strand 6
A
824 833anti-parallel
Strand 7
A
965 972anti-parallel
Strand 8
A
954 960anti-parallel
Strand 9
A
886 889parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 619first strand
Strand 2
A
654 656anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 846first strand
Strand 2
A
849 854anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il