Analysis of interatomic Contacts of Structural Units in PDB entry:
3TUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TUE entry

There are 5 chains in PDB entry 3TUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4HIS 169
B
 ASN 5LYS 168
C
 ASN 5LYS 168
D
 ASN 5LYS 168
E
 ASN 5LYS 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3TUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 35Right-handed 310
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
62 68Right-handed alpha
Helix 4
4
A
80 90Right-handed alpha
Helix 5
5
A
91 95Right-handed 310
Helix 6
6
A
110 116Right-handed alpha
Helix 7
7
A
152 169Right-handed alpha
Helix 8
8
B
32 35Right-handed 310
Helix 9
9
B
53 61Right-handed alpha
Helix 10
10
B
62 68Right-handed alpha
Helix 11
11
B
80 90Right-handed alpha
Helix 12
12
B
91 95Right-handed 310
Helix 13
13
B
110 116Right-handed alpha
Helix 14
14
B
152 168Right-handed alpha
Helix 15
15
C
32 35Right-handed 310
Helix 16
16
C
53 61Right-handed alpha
Helix 17
17
C
62 68Right-handed alpha
Helix 18
18
C
80 90Right-handed alpha
Helix 19
19
C
91 95Right-handed 310
Helix 20
20
C
110 116Right-handed alpha
Helix 21
21
C
152 168Right-handed alpha
Helix 22
22
D
32 35Right-handed 310
Helix 23
23
D
53 61Right-handed alpha
Helix 24
24
D
62 68Right-handed alpha
Helix 25
25
D
80 90Right-handed alpha
Helix 26
26
D
91 95Right-handed 310
Helix 27
27
D
110 116Right-handed alpha
Helix 28
28
D
152 167Right-handed alpha
Helix 29
29
E
32 35Right-handed 310
Helix 30
30
E
53 61Right-handed alpha
Helix 31
31
E
62 68Right-handed alpha
Helix 32
32
E
80 90Right-handed alpha
Helix 33
33
E
110 116Right-handed alpha
Helix 34
34
E
152 168Right-handed alpha
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There are 8 sheets in PDB entry 3TUE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
104 106anti-parallel
Strand 4
A
71 77parallel
Strand 5
A
38 43parallel
Strand 6
A
128 133anti-parallel
Strand 7
A
139 145anti-parallel
Strand 8
B
139 145anti-parallel
Strand 9
B
128 133anti-parallel
Strand 10
B
38 43anti-parallel
Strand 11
B
71 77parallel
Strand 12
B
104 106parallel
Strand 13
B
16 20anti-parallel
Strand 14
B
26 30anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
125 126anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
125 126anti-parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 30first strand
Strand 2
C
16 20anti-parallel
Strand 3
C
104 106anti-parallel
Strand 4
C
71 77parallel
Strand 5
C
38 43parallel
Strand 6
C
128 133anti-parallel
Strand 7
C
139 145anti-parallel
Strand 8
D
139 145anti-parallel
Strand 9
D
128 133anti-parallel
Strand 10
D
38 43anti-parallel
Strand 11
D
71 77parallel
Strand 12
D
104 106parallel
Strand 13
D
16 20anti-parallel
Strand 14
D
26 30anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 120first strand
Strand 2
C
125 126anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 120first strand
Strand 2
D
125 126anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 30first strand
Strand 2
E
16 20anti-parallel
Strand 3
E
104 106anti-parallel
Strand 4
E
71 77parallel
Strand 5
E
38 43parallel
Strand 6
E
128 133anti-parallel
Strand 7
E
139 145anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 120first strand
Strand 2
E
125 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il