Analysis of interatomic Contacts of Structural Units in PDB entry:
3TUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TUG entry

There is 1 chain in PDB entry 3TUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 525THR 897
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3TUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
527 540Right-handed alpha
Helix 2
2
A
556 568Right-handed alpha
Helix 3
3
A
571 575Right-handed 310
Helix 4
4
A
588 604Right-handed alpha
Helix 5
5
A
626 631Right-handed 310
Helix 6
6
A
633 651Right-handed alpha
Helix 7
7
A
660 668Right-handed alpha
Helix 8
8
A
674 678Right-handed 310
Helix 9
9
A
681 693Right-handed alpha
Helix 10
10
A
735 748Right-handed alpha
Helix 11
11
A
750 765Right-handed alpha
Helix 12
12
A
766 771Right-handed 310
Helix 13
13
A
774 784Right-handed alpha
Helix 14
14
A
789 796Right-handed alpha
Helix 15
15
A
806 819Right-handed alpha
Helix 16
16
A
820 833Right-handed alpha
Helix 17
17
A
841 845Right-handed 310
Helix 18
18
A
870 872Right-handed 310
Helix 19
19
A
882 896Right-handed alpha
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There are 3 sheets in PDB entry 3TUG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 551first strand
Strand 2
A
576 580parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 614first strand
Strand 2
A
621 624anti-parallel
Strand 3
A
658 659parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
855 858parallel
Strand 3
A
874 877parallel
Strand 4
A
867 869anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il