Analysis of interatomic Contacts of Structural Units in PDB entry:
3TUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TUJ entry

There are 4 chains in PDB entry 3TUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 216
B
 MSE 1THR 215
C
 HIS 0VAL 343
D
 HIS 0VAL 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3TUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 41Right-handed alpha
Helix 2
2
A
49 66Right-handed alpha
Helix 3
3
A
67 75Right-handed alpha
Helix 4
4
A
75 84Right-handed alpha
Helix 5
5
A
88 97Right-handed alpha
Helix 6
6
A
100 114Right-handed alpha
Helix 7
7
A
116 127Right-handed alpha
Helix 8
8
A
129 137Right-handed alpha
Helix 9
9
A
137 165Right-handed alpha
Helix 10
10
A
171 182Right-handed alpha
Helix 11
11
A
185 214Right-handed alpha
Helix 12
12
B
2 41Right-handed alpha
Helix 13
13
B
55 65Right-handed alpha
Helix 14
14
B
67 75Right-handed alpha
Helix 15
15
B
75 84Right-handed alpha
Helix 16
16
B
88 113Right-handed alpha
Helix 17
17
B
118 127Right-handed alpha
Helix 18
18
B
129 137Right-handed alpha
Helix 19
19
B
137 167Right-handed alpha
Helix 20
20
B
171 181Right-handed alpha
Helix 21
21
B
185 213Right-handed alpha
Helix 22
22
C
43 49Right-handed alpha
Helix 23
23
C
69 73Right-handed 310
Helix 24
24
C
76 81Right-handed alpha
Helix 25
25
C
98 109Right-handed alpha
Helix 26
26
C
115 129Right-handed alpha
Helix 27
27
C
137 141Right-handed 310
Helix 28
28
C
142 155Right-handed alpha
Helix 29
29
C
174 190Right-handed alpha
Helix 30
30
C
201 207Right-handed alpha
Helix 31
31
C
225 231Right-handed alpha
Helix 32
32
C
234 243Right-handed alpha
Helix 33
33
C
250 255Right-handed alpha
Helix 34
34
C
281 290Right-handed alpha
Helix 35
35
C
319 333Right-handed alpha
Helix 36
36
D
43 49Right-handed alpha
Helix 37
37
D
76 83Right-handed alpha
Helix 38
38
D
98 109Right-handed alpha
Helix 39
39
D
113 129Right-handed alpha
Helix 40
40
D
142 155Right-handed alpha
Helix 41
41
D
156 158Right-handed 310
Helix 42
42
D
172 191Right-handed alpha
Helix 43
43
D
200 207Right-handed alpha
Helix 44
44
D
225 231Right-handed alpha
Helix 45
45
D
236 243Right-handed alpha
Helix 46
46
D
250 257Right-handed alpha
Helix 47
47
D
281 291Right-handed alpha
Helix 48
48
D
319 333Right-handed alpha
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There are 5 sheets in PDB entry 3TUJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 27first strand
Strand 2
C
2 12anti-parallel
Strand 3
C
59 64anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 87first strand
Strand 2
C
161 165parallel
Strand 3
C
193 197parallel
Strand 4
C
33 38parallel
Strand 5
C
210 215parallel
Strand 6
C
218 224anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 343first strand
Strand 2
C
266 274anti-parallel
Strand 3
C
308 316anti-parallel
Strand 4
C
294 303anti-parallel
Strand 5
D
293 303anti-parallel
Strand 6
D
308 317anti-parallel
Strand 7
D
267 273anti-parallel
Strand 8
D
335 342anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 27first strand
Strand 2
D
3 12anti-parallel
Strand 3
D
59 64anti-parallel
Strand 4
D
67 68anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 87first strand
Strand 2
D
161 165parallel
Strand 3
D
193 197parallel
Strand 4
D
33 38parallel
Strand 5
D
210 215parallel
Strand 6
D
218 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il