Analysis of interatomic Contacts of Structural Units in PDB entry:
3TV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TV9 entry

There is 1 chain in PDB entry 3TV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 10ILE 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3TV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 31Right-handed alpha
Helix 2
2
A
85 100Right-handed alpha
Helix 3
3
A
113 117Right-handed 310
Helix 4
4
A
133 151Right-handed alpha
Helix 5
5
A
212 216Right-handed 310
Helix 6
6
A
218 233Right-handed alpha
Helix 7
7
A
249 264Right-handed alpha
Helix 8
8
A
265 271Right-handed alpha
Helix 9
9
A
330 338Right-handed alpha
Helix 10
10
A
359 368Right-handed alpha
Helix 11
11
A
415 421Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3TV9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 81first strand
Strand 2
A
57 72anti-parallel
Strand 3
A
35 50anti-parallel
Strand 4
A
155 174anti-parallel
Strand 5
A
178 195anti-parallel
Strand 6
A
202 210anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 414first strand
Strand 2
A
387 398anti-parallel
Strand 3
A
370 377anti-parallel
Strand 4
A
242 248parallel
Strand 5
A
440 447anti-parallel
Strand 6
A
424 425anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
316 320anti-parallel
Strand 3
A
291 293anti-parallel
Strand 4
A
351 353anti-parallel
Strand 5
A
435 436parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il