Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TVJ entry

There are 3 chains in PDB entry 3TVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 362ARG 444
B
 ILE 445PHE 686
I
 GLU 1GLN 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3TVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
481 486Right-handed alpha
Helix 2
2
B
557 562Right-handed 310
Helix 3
3
B
594 604Right-handed alpha
Helix 4
4
B
675 686Right-handed alpha
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There are 6 sheets in PDB entry 3TVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 379first strand
Strand 2
A
391 396anti-parallel
Strand 3
A
409 412anti-parallel
Strand 4
A
418 420anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 403first strand
Strand 2
A
430 432anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 450first strand
Strand 2
B
586 591anti-parallel
Strand 3
B
567 572anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
32 33first strand
Strand 2
B
466 472anti-parallel
Strand 3
B
477 480anti-parallel
Strand 4
B
534 538anti-parallel
Strand 5
B
510 519anti-parallel
Strand 6
B
496 499anti-parallel
Strand 7
B
459 463anti-parallel
Strand 8
B
466 472anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 619first strand
Strand 2
B
667 671anti-parallel
Strand 3
B
646 657anti-parallel
Strand 4
B
636 641anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 619first strand
Strand 2
B
667 671anti-parallel
Strand 3
B
646 657anti-parallel
Strand 4
I
26 29anti-parallel
Strand 5
I
15 19anti-parallel
Strand 6
I
9 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il