Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TVL entry

There are 2 chains in PDB entry 3TVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4SER 214
B
 LEU 5GLU 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3TVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 25Right-handed alpha
Helix 2
2
A
45 50Right-handed alpha
Helix 3
3
A
84 97Right-handed alpha
Helix 4
4
A
105 110Right-handed alpha
Helix 5
5
A
164 166Right-handed 310
Helix 6
6
A
167 182Right-handed alpha
Helix 7
7
A
192 202Right-handed alpha
Helix 8
8
A
202 213Right-handed alpha
Helix 9
9
B
17 25Right-handed alpha
Helix 10
10
B
45 50Right-handed alpha
Helix 11
11
B
84 96Right-handed alpha
Helix 12
12
B
105 114Right-handed alpha
Helix 13
13
B
164 166Right-handed 310
Helix 14
14
B
167 183Right-handed alpha
Helix 15
15
B
192 202Right-handed alpha
Helix 16
16
B
202 211Right-handed alpha
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There are 2 sheets in PDB entry 3TVL. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 12first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
61 67anti-parallel
Strand 4
A
53 57anti-parallel
Strand 5
A
28 41anti-parallel
Strand 6
A
116 130anti-parallel
Strand 7
A
142 149anti-parallel
Strand 8
A
154 162anti-parallel
Strand 9
A
5 12anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 12first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
53 57anti-parallel
Strand 5
B
28 41anti-parallel
Strand 6
B
116 130anti-parallel
Strand 7
B
142 149anti-parallel
Strand 8
B
154 162anti-parallel
Strand 9
B
6 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il