Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TVM entry

There are 7 chains in PDB entry 3TVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	TRP 279
B	GLN 2	MET 99
C	THR 1	SER 206
D	ALA 2	ALA 240
E	ASN 7	ALA 249
F	GLN 2	ASP 98
G	THR 1	ILE 198

There are 23 helices in PDB entry 3TVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	89	Right-handed alpha
Helix 2	2	A	140	142	Right-handed 310
Helix 3	3	A	143	152	Right-handed alpha
Helix 4	4	A	153	166	Right-handed alpha
Helix 5	5	A	166	179	Right-handed alpha
Helix 6	6	A	179	184	Right-handed alpha
Helix 7	7	A	267	271	Right-handed 310
Helix 8	8	C	81	85	Right-handed 310
Helix 9	9	C	188	192	Right-handed 310
Helix 10	10	D	82	86	Right-handed 310
Helix 11	11	D	128	136	Right-handed alpha
Helix 12	12	D	195	199	Right-handed alpha
Helix 13	13	E	59	89	Right-handed alpha
Helix 14	14	E	140	142	Right-handed 310
Helix 15	15	E	143	152	Right-handed alpha
Helix 16	16	E	153	166	Right-handed alpha
Helix 17	17	E	168	179	Right-handed alpha
Helix 18	18	E	179	184	Right-handed alpha
Helix 19	19	G	81	85	Right-handed 310
Helix 20	20	G	169	172	Right-handed 310
Helix 21	21	H	82	86	Right-handed 310
Helix 22	22	H	128	136	Right-handed alpha
Helix 23	23	H	195	200	Right-handed alpha

There are 32 sheets in PDB entry 3TVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	24	32	anti-parallel
Strand 4	A	9	18	anti-parallel
Strand 5	A	96	107	anti-parallel
Strand 6	A	111	120	anti-parallel
Strand 7	A	123	129	anti-parallel
Strand 8	A	132	135	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	196	first strand
Strand 2	A	205	213	anti-parallel
Strand 3	A	245	251	anti-parallel
Strand 4	A	232	234	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	196	first strand
Strand 2	A	205	213	anti-parallel
Strand 3	A	245	251	anti-parallel
Strand 4	A	238	239	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	261	266	anti-parallel
Strand 4	A	275	278	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	35	41	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	72	77	anti-parallel
Strand 4	C	62	67	anti-parallel
Strand 5	C	53	58	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	110	115	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	31	37	anti-parallel
Strand 5	C	44	49	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	110	115	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	104	106	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	160	first strand
Strand 2	C	174	182	anti-parallel
Strand 3	C	137	142	anti-parallel
Strand 4	C	124	130	anti-parallel
Strand 5	D	121	126	anti-parallel
Strand 6	D	137	147	anti-parallel
Strand 7	D	185	194	anti-parallel
Strand 8	D	167	169	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	174	182	anti-parallel
Strand 3	C	137	142	anti-parallel
Strand 4	C	124	130	anti-parallel
Strand 5	D	121	126	anti-parallel
Strand 6	D	137	147	anti-parallel
Strand 7	D	185	194	anti-parallel
Strand 8	D	174	175	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	65	67	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	44	51	anti-parallel
Strand 6	D	54	57	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	101	102	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	152	158	anti-parallel
Strand 3	D	204	211	anti-parallel
Strand 4	D	230	237	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	24	32	anti-parallel
Strand 4	E	10	18	anti-parallel
Strand 5	E	96	105	anti-parallel
Strand 6	E	113	120	anti-parallel
Strand 7	E	123	129	anti-parallel
Strand 8	E	132	135	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	194	first strand
Strand 2	E	207	211	anti-parallel
Strand 3	E	246	248	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	50	51	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	55	56	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	36	41	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	91	94	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	72	77	anti-parallel
Strand 4	G	62	67	anti-parallel
Strand 5	G	53	58	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	110	115	parallel
Strand 3	G	86	93	anti-parallel
Strand 4	G	31	37	anti-parallel
Strand 5	G	43	49	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	110	115	parallel
Strand 3	G	86	93	anti-parallel
Strand 4	G	104	106	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	124	129	first strand
Strand 2	G	137	142	anti-parallel
Strand 3	G	173	182	anti-parallel
Strand 4	G	158	160	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	124	129	first strand
Strand 2	G	137	142	anti-parallel
Strand 3	G	173	182	anti-parallel
Strand 4	G	164	168	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	73	78	anti-parallel
Strand 4	H	65	67	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	106	111	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	31	37	anti-parallel
Strand 5	H	44	49	anti-parallel
Strand 6	H	56	57	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	106	111	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	101	102	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	137	147	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	137	147	anti-parallel
Strand 3	H	185	194	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	163	first strand
Strand 2	H	152	158	anti-parallel
Strand 3	H	204	211	anti-parallel
Strand 4	H	230	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVM