Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TVT entry

There are 2 chains in PDB entry 3TVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 602SER 971
B
 ARG 434PRO 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3TVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
662 672Right-handed alpha
Helix 2
2
A
794 806Right-handed alpha
Helix 3
3
A
836 846Right-handed alpha
Helix 4
4
A
864 874Right-handed alpha
Helix 5
5
A
883 892Right-handed alpha
Helix 6
6
A
905 912Right-handed alpha
Helix 7
7
A
919 936Right-handed alpha
Helix 8
8
A
947 963Right-handed alpha
Helix 9
9
B
434 440Right-handed 310
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There are 3 sheets in PDB entry 3TVT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 661first strand
Strand 2
A
642 645anti-parallel
Strand 3
A
631 636anti-parallel
Strand 4
A
604 607anti-parallel
Strand 5
A
774 781anti-parallel
Strand 6
A
966 970anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 811first strand
Strand 2
A
876 879parallel
Strand 3
A
788 791parallel
Strand 4
A
897 901parallel
Strand 5
A
941 943parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 833first strand
Strand 2
A
816 817parallel
Strand 3
A
858 863anti-parallel
Strand 4
A
849 855anti-parallel
Strand 5
B
441 443anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il