Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TVV entry

There are 2 chains in PDB entry 3TVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 0GLU 310
B
 HIS -1GLU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3TVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
118 122Right-handed alpha
Helix 2
2
A
147 151Right-handed 310
Helix 3
3
A
162 172Right-handed alpha
Helix 4
4
A
182 197Right-handed alpha
Helix 5
5
A
290 309Right-handed alpha
Helix 6
6
B
118 122Right-handed alpha
Helix 7
7
B
162 172Right-handed alpha
Helix 8
8
B
181 196Right-handed alpha
Helix 9
9
B
290 311Right-handed alpha
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There are 6 sheets in PDB entry 3TVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
102 108anti-parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
72 83anti-parallel
Strand 5
A
156 161anti-parallel
Strand 6
A
137 144anti-parallel
Strand 7
A
123 130anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 226first strand
Strand 2
A
229 235anti-parallel
Strand 3
A
239 242anti-parallel
Strand 4
A
249 252anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 262first strand
Strand 2
A
268 275anti-parallel
Strand 3
A
280 287anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
102 108anti-parallel
Strand 3
B
87 95anti-parallel
Strand 4
B
72 83anti-parallel
Strand 5
B
154 161anti-parallel
Strand 6
B
137 144anti-parallel
Strand 7
B
123 130anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 226first strand
Strand 2
B
229 235anti-parallel
Strand 3
B
239 243anti-parallel
Strand 4
B
249 252anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 262first strand
Strand 2
B
268 275anti-parallel
Strand 3
B
280 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il