Analysis of interatomic Contacts of Structural Units in PDB entry:
3TVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TVY entry

There is 1 chain in PDB entry 3TVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 220VAL 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3TVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
231 235Right-handed 310
Helix 2
2
A
237 242Right-handed alpha
Helix 3
3
A
243 261Right-handed alpha
Helix 4
4
A
324 334Right-handed alpha
Helix 5
5
A
345 350Right-handed alpha
Helix 6
6
A
355 371Right-handed alpha
Helix 7
7
A
402 413Right-handed alpha
Helix 8
8
A
421 425Right-handed 310
Helix 9
9
A
430 435Right-handed alpha
Helix 10
10
A
464 466Right-handed 310
Helix 11
11
A
467 475Right-handed alpha
Helix 12
12
A
489 492Right-handed 310
Helix 13
13
A
512 524Right-handed alpha
Helix 14
14
A
525 528Right-handed 310
Helix 15
15
A
545 556Right-handed alpha
Helix 16
16
A
559 561Right-handed 310
Helix 17
17
A
568 570Right-handed 310
Helix 18
18
A
571 582Right-handed alpha
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There are 4 sheets in PDB entry 3TVY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 322first strand
Strand 2
A
266 272anti-parallel
Strand 3
A
222 229parallel
Strand 4
A
376 383parallel
Strand 5
A
530 536parallel
Strand 6
A
563 566parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 285first strand
Strand 2
A
308 312anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
288 289anti-parallel
Strand 3
A
486 487anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
482 484anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il