Analysis of interatomic Contacts of Structural Units in PDB entry:
3TX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TX8 entry

There is 1 chain in PDB entry 3TX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10GLU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3TX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 24Right-handed alpha
Helix 2
2
A
32 45Right-handed alpha
Helix 3
3
A
104 119Right-handed alpha
Helix 4
4
A
143 152Right-handed alpha
Helix 5
5
A
153 157Right-handed 310
Helix 6
6
A
194 198Right-handed 310
Helix 7
7
A
201 204Right-handed 310
Helix 8
8
A
205 215Right-handed alpha
Helix 9
9
A
262 274Right-handed alpha
Helix 10
10
A
299 310Right-handed alpha
Helix 11
11
A
322 328Right-handed alpha
Helix 12
12
A
353 369Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3TX8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
127 133anti-parallel
Strand 4
A
71 77parallel
Strand 5
A
160 163parallel
Strand 6
A
333 336parallel
Strand 7
A
171 173anti-parallel
Strand 8
A
314 316parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
95 97anti-parallel
Strand 3
A
350 352anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 238first strand
Strand 2
A
248 257anti-parallel
Strand 3
A
177 186anti-parallel
Strand 4
A
282 290anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
225 228anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il