Analysis of interatomic Contacts of Structural Units in PDB entry:
3TY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TY1 entry

There are 3 chains in PDB entry 3TY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 402
B
 GLY 0GLU 402
C
 GLY 0GLU 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3TY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 31Right-handed 310
Helix 2
2
A
60 64Right-handed 310
Helix 3
3
A
110 114Right-handed 310
Helix 4
4
A
117 122Right-handed alpha
Helix 5
5
A
123 127Right-handed 310
Helix 6
6
A
156 160Right-handed 310
Helix 7
7
A
254 261Right-handed 310
Helix 8
8
A
342 349Right-handed alpha
Helix 9
9
A
372 388Right-handed alpha
Helix 10
10
B
29 31Right-handed 310
Helix 11
11
B
60 64Right-handed 310
Helix 12
12
B
83 86Right-handed 310
Helix 13
13
B
110 114Right-handed 310
Helix 14
14
B
117 122Right-handed alpha
Helix 15
15
B
123 127Right-handed 310
Helix 16
16
B
156 160Right-handed 310
Helix 17
17
B
254 261Right-handed 310
Helix 18
18
B
342 349Right-handed alpha
Helix 19
19
B
372 388Right-handed alpha
Helix 20
20
C
60 64Right-handed 310
Helix 21
21
C
110 114Right-handed 310
Helix 22
22
C
117 122Right-handed alpha
Helix 23
23
C
123 127Right-handed 310
Helix 24
24
C
156 160Right-handed 310
Helix 25
25
C
254 261Right-handed 310
Helix 26
26
C
342 349Right-handed alpha
Helix 27
27
C
372 388Right-handed alpha
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There are 15 sheets in PDB entry 3TY1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
164 170anti-parallel
Strand 4
A
177 187anti-parallel
Strand 5
A
191 201anti-parallel
Strand 6
A
207 216anti-parallel
Strand 7
A
360 370anti-parallel
Strand 8
A
303 309anti-parallel
Strand 9
A
290 296anti-parallel
Strand 10
A
242 244anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
78 82anti-parallel
Strand 5
A
88 94anti-parallel
Strand 6
A
97 99anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
222 232anti-parallel
Strand 3
A
353 355anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
222 232anti-parallel
Strand 3
A
329 336anti-parallel
Strand 4
A
315 322anti-parallel
Strand 5
A
277 283anti-parallel
Strand 6
A
247 252anti-parallel
Strand 7
A
393 394parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
149 151anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
164 170anti-parallel
Strand 4
B
177 187anti-parallel
Strand 5
B
191 201anti-parallel
Strand 6
B
207 216anti-parallel
Strand 7
B
360 370anti-parallel
Strand 8
B
303 309anti-parallel
Strand 9
B
290 296anti-parallel
Strand 10
B
242 244anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
51 57anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
78 81anti-parallel
Strand 5
B
89 94anti-parallel
Strand 6
B
97 99anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 137first strand
Strand 2
B
222 232anti-parallel
Strand 3
B
353 355anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 137first strand
Strand 2
B
222 232anti-parallel
Strand 3
B
329 336anti-parallel
Strand 4
B
315 322anti-parallel
Strand 5
B
277 283anti-parallel
Strand 6
B
247 252anti-parallel
Strand 7
B
393 394parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
149 151anti-parallel
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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
20 27anti-parallel
Strand 3
C
164 170anti-parallel
Strand 4
C
177 187anti-parallel
Strand 5
C
191 201anti-parallel
Strand 6
C
207 216anti-parallel
Strand 7
C
360 370anti-parallel
Strand 8
C
303 309anti-parallel
Strand 9
C
290 296anti-parallel
Strand 10
C
242 244anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
51 57anti-parallel
Strand 3
C
67 73anti-parallel
Strand 4
C
78 82anti-parallel
Strand 5
C
88 94anti-parallel
Strand 6
C
97 99anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 137first strand
Strand 2
C
222 232anti-parallel
Strand 3
C
353 355anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 137first strand
Strand 2
C
222 232anti-parallel
Strand 3
C
329 336anti-parallel
Strand 4
C
315 322anti-parallel
Strand 5
C
277 283anti-parallel
Strand 6
C
247 252anti-parallel
Strand 7
C
393 394parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 146first strand
Strand 2
C
149 151anti-parallel
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