Analysis of interatomic Contacts of Structural Units in PDB entry:
3TY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TY4 entry

There are 2 chains in PDB entry 3TY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ILE 360
B
 THR 4ILE 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 3TY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
32 37Right-handed 310
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
60 71Right-handed alpha
Helix 5
5
A
91 100Right-handed alpha
Helix 6
6
A
130 135Right-handed 310
Helix 7
7
A
157 180Right-handed alpha
Helix 8
8
A
202 215Right-handed alpha
Helix 9
9
A
216 222Right-handed 310
Helix 10
10
A
231 241Right-handed alpha
Helix 11
11
A
242 245Right-handed 310
Helix 12
12
A
251 264Right-handed alpha
Helix 13
13
A
265 267Right-handed 310
Helix 14
14
A
268 272Right-handed 310
Helix 15
15
A
302 316Right-handed alpha
Helix 16
16
A
318 336Right-handed alpha
Helix 17
17
A
340 344Right-handed 310
Helix 18
18
A
348 360Right-handed alpha
Helix 19
19
B
17 31Right-handed alpha
Helix 20
20
B
32 36Right-handed 310
Helix 21
21
B
48 56Right-handed alpha
Helix 22
22
B
60 71Right-handed alpha
Helix 23
23
B
91 100Right-handed alpha
Helix 24
24
B
130 135Right-handed 310
Helix 25
25
B
157 180Right-handed alpha
Helix 26
26
B
200 215Right-handed alpha
Helix 27
27
B
216 222Right-handed 310
Helix 28
28
B
231 241Right-handed alpha
Helix 29
29
B
242 245Right-handed 310
Helix 30
30
B
251 264Right-handed alpha
Helix 31
31
B
268 272Right-handed 310
Helix 32
32
B
302 316Right-handed alpha
Helix 33
33
B
318 336Right-handed alpha
Helix 34
34
B
340 344Right-handed 310
Helix 35
35
B
348 360Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3TY4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
6 14parallel
Strand 3
A
73 78parallel
Strand 4
A
282 284parallel
Strand 5
A
275 277anti-parallel
Strand 6
A
104 110anti-parallel
Strand 7
A
121 127anti-parallel
Strand 8
A
247 250parallel
Strand 9
A
190 195parallel
Strand 10
A
225 230parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
148 156anti-parallel
Strand 3
B
148 156anti-parallel
Strand 4
B
137 141anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 44first strand
Strand 2
B
5 14parallel
Strand 3
B
73 78parallel
Strand 4
B
282 284parallel
Strand 5
B
275 277anti-parallel
Strand 6
B
104 110anti-parallel
Strand 7
B
121 127anti-parallel
Strand 8
B
247 250parallel
Strand 9
B
190 195parallel
Strand 10
B
225 230parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il