Analysis of interatomic Contacts of Structural Units in PDB entry:
3TY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TY5 entry

There are 2 chains in PDB entry 3TY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 477LEU 870
B
 SER 480LEU 870
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3TY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
485 489Right-handed 310
Helix 2
2
A
510 520Right-handed alpha
Helix 3
3
A
544 553Right-handed alpha
Helix 4
4
A
573 592Right-handed alpha
Helix 5
5
A
592 598Right-handed alpha
Helix 6
6
A
619 625Right-handed alpha
Helix 7
7
A
630 645Right-handed alpha
Helix 8
8
A
664 672Right-handed alpha
Helix 9
9
A
674 691Right-handed alpha
Helix 10
10
A
695 697Right-handed 310
Helix 11
11
A
718 730Right-handed alpha
Helix 12
12
A
749 766Right-handed alpha
Helix 13
13
A
798 804Right-handed alpha
Helix 14
14
A
805 808Right-handed 310
Helix 15
15
A
810 814Right-handed 310
Helix 16
16
A
815 816Right-handed 310
Helix 17
17
A
817 844Right-handed alpha
Helix 18
18
A
847 863Right-handed alpha
Helix 19
19
B
510 520Right-handed alpha
Helix 20
20
B
544 553Right-handed alpha
Helix 21
21
B
573 591Right-handed alpha
Helix 22
22
B
592 598Right-handed alpha
Helix 23
23
B
610 614Right-handed 310
Helix 24
24
B
629 646Right-handed alpha
Helix 25
25
B
664 687Right-handed alpha
Helix 26
26
B
688 690Right-handed 310
Helix 27
27
B
695 699Right-handed 310
Helix 28
28
B
718 731Right-handed alpha
Helix 29
29
B
749 764Right-handed alpha
Helix 30
30
B
795 804Right-handed alpha
Helix 31
31
B
812 844Right-handed alpha
Helix 32
32
B
847 862Right-handed alpha
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There are 7 sheets in PDB entry 3TY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
791 794parallel
Strand 3
A
770 775anti-parallel
Strand 4
A
525 530anti-parallel
Strand 5
A
742 746anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 564first strand
Strand 2
A
535 542anti-parallel
Strand 3
A
601 612anti-parallel
Strand 4
A
617 618anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 564first strand
Strand 2
A
535 542anti-parallel
Strand 3
A
601 612anti-parallel
Strand 4
A
699 709anti-parallel
Strand 5
A
712 713anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 782first strand
Strand 2
A
785 786anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 498first strand
Strand 2
B
791 794parallel
Strand 3
B
770 775anti-parallel
Strand 4
B
525 530anti-parallel
Strand 5
B
742 746anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 563first strand
Strand 2
B
535 542anti-parallel
Strand 3
B
601 609anti-parallel
Strand 4
B
700 709anti-parallel
Strand 5
B
712 713anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
781 782first strand
Strand 2
B
785 786anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il