Analysis of interatomic Contacts of Structural Units in PDB entry:
3TY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TY9 entry

There are 4 chains in PDB entry 3TY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 478	LEU 870
B	SER 478	LEU 870
C	SER 478	LEU 870
D	SER 478	LEU 870

There are 56 helices in PDB entry 3TY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	485	489	Right-handed 310
Helix 2	2	A	510	521	Right-handed alpha
Helix 3	3	A	544	551	Right-handed alpha
Helix 4	4	A	573	591	Right-handed alpha
Helix 5	5	A	592	597	Right-handed alpha
Helix 6	6	A	612	645	Right-handed alpha
Helix 7	7	A	663	688	Right-handed alpha
Helix 8	8	A	695	697	Right-handed 310
Helix 9	9	A	718	731	Right-handed alpha
Helix 10	10	A	749	765	Right-handed alpha
Helix 11	11	A	795	804	Right-handed alpha
Helix 12	12	A	805	808	Right-handed 310
Helix 13	13	A	810	844	Right-handed alpha
Helix 14	14	A	847	862	Right-handed alpha
Helix 15	15	B	485	489	Right-handed 310
Helix 16	16	B	510	521	Right-handed alpha
Helix 17	17	B	546	551	Right-handed alpha
Helix 18	18	B	573	592	Right-handed alpha
Helix 19	19	B	592	597	Right-handed alpha
Helix 20	20	B	612	642	Right-handed alpha
Helix 21	21	B	665	689	Right-handed alpha
Helix 22	22	B	695	697	Right-handed 310
Helix 23	23	B	718	731	Right-handed alpha
Helix 24	24	B	751	765	Right-handed alpha
Helix 25	25	B	795	804	Right-handed alpha
Helix 26	26	B	805	808	Right-handed 310
Helix 27	27	B	810	844	Right-handed alpha
Helix 28	28	B	847	862	Right-handed alpha
Helix 29	29	C	485	489	Right-handed 310
Helix 30	30	C	510	520	Right-handed alpha
Helix 31	31	C	544	551	Right-handed alpha
Helix 32	32	C	573	592	Right-handed alpha
Helix 33	33	C	592	597	Right-handed alpha
Helix 34	34	C	612	645	Right-handed alpha
Helix 35	35	C	663	689	Right-handed alpha
Helix 36	36	C	695	697	Right-handed 310
Helix 37	37	C	718	731	Right-handed alpha
Helix 38	38	C	749	765	Right-handed alpha
Helix 39	39	C	795	804	Right-handed alpha
Helix 40	40	C	805	808	Right-handed 310
Helix 41	41	C	810	844	Right-handed alpha
Helix 42	42	C	847	862	Right-handed alpha
Helix 43	43	D	485	489	Right-handed 310
Helix 44	44	D	510	521	Right-handed alpha
Helix 45	45	D	544	551	Right-handed alpha
Helix 46	46	D	573	592	Right-handed alpha
Helix 47	47	D	592	597	Right-handed alpha
Helix 48	48	D	612	643	Right-handed alpha
Helix 49	49	D	664	688	Right-handed alpha
Helix 50	50	D	695	697	Right-handed 310
Helix 51	51	D	718	731	Right-handed alpha
Helix 52	52	D	749	766	Right-handed alpha
Helix 53	53	D	795	804	Right-handed alpha
Helix 54	54	D	805	808	Right-handed 310
Helix 55	55	D	810	844	Right-handed alpha
Helix 56	56	D	847	862	Right-handed alpha

There are 10 sheets in PDB entry 3TY9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	746	first strand
Strand 2	A	525	530	anti-parallel
Strand 3	A	770	775	anti-parallel
Strand 4	A	791	794	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	563	first strand
Strand 2	A	535	542	anti-parallel
Strand 3	A	601	610	anti-parallel
Strand 4	A	699	709	anti-parallel
Strand 5	A	712	713	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	746	first strand
Strand 2	B	525	530	anti-parallel
Strand 3	B	770	775	anti-parallel
Strand 4	B	791	794	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	563	first strand
Strand 2	B	535	542	anti-parallel
Strand 3	B	601	610	anti-parallel
Strand 4	B	699	709	anti-parallel
Strand 5	B	712	713	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	483	first strand
Strand 2	C	568	569	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	498	first strand
Strand 2	C	791	794	parallel
Strand 3	C	770	775	anti-parallel
Strand 4	C	525	530	anti-parallel
Strand 5	C	742	746	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	563	first strand
Strand 2	C	535	542	anti-parallel
Strand 3	C	601	610	anti-parallel
Strand 4	C	699	709	anti-parallel
Strand 5	C	712	713	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	483	first strand
Strand 2	D	568	569	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	498	first strand
Strand 2	D	791	794	parallel
Strand 3	D	770	775	anti-parallel
Strand 4	D	525	530	anti-parallel
Strand 5	D	742	746	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	563	first strand
Strand 2	D	535	542	anti-parallel
Strand 3	D	601	610	anti-parallel
Strand 4	D	699	709	anti-parallel
Strand 5	D	712	713	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TY9