Analysis of interatomic Contacts of Structural Units in PDB entry:
3TYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TYH entry

There are 9 chains in PDB entry 3TYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	LYS 309
B	ASP 1	LYS 309
C	ASP 1	LYS 309
D	ASP 1	LYS 309
E	ASP 1	LYS 309
F	ASP 1	LYS 309
G	ASP 1	LYS 309
H	ASP 1	LYS 309
I	ASP 1	LYS 309

There are153 helices in PDB entry 3TYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	25	Right-handed alpha
Helix 2	2	A	34	46	Right-handed alpha
Helix 3	3	A	58	68	Right-handed alpha
Helix 4	4	A	75	82	Right-handed alpha
Helix 5	5	A	113	117	Right-handed 310
Helix 6	6	A	120	125	Right-handed 310
Helix 7	7	A	126	130	Right-handed 310
Helix 8	8	A	139	154	Right-handed alpha
Helix 9	9	A	154	169	Right-handed alpha
Helix 10	10	A	174	184	Right-handed alpha
Helix 11	11	A	194	205	Right-handed alpha
Helix 12	12	A	206	209	Right-handed 310
Helix 13	13	A	220	223	Right-handed 310
Helix 14	14	A	238	251	Right-handed alpha
Helix 15	15	A	251	259	Right-handed alpha
Helix 16	16	A	279	284	Right-handed alpha
Helix 17	17	A	292	307	Right-handed alpha
Helix 18	18	B	9	25	Right-handed alpha
Helix 19	19	B	34	44	Right-handed alpha
Helix 20	20	B	59	68	Right-handed alpha
Helix 21	21	B	75	80	Right-handed alpha
Helix 22	22	B	113	117	Right-handed 310
Helix 23	23	B	120	125	Right-handed 310
Helix 24	24	B	126	130	Right-handed 310
Helix 25	25	B	139	154	Right-handed alpha
Helix 26	26	B	154	169	Right-handed alpha
Helix 27	27	B	174	184	Right-handed alpha
Helix 28	28	B	194	205	Right-handed alpha
Helix 29	29	B	206	209	Right-handed 310
Helix 30	30	B	220	223	Right-handed 310
Helix 31	31	B	238	251	Right-handed alpha
Helix 32	32	B	251	262	Right-handed alpha
Helix 33	33	B	279	284	Right-handed 310
Helix 34	34	B	292	307	Right-handed alpha
Helix 35	35	C	9	25	Right-handed alpha
Helix 36	36	C	34	46	Right-handed alpha
Helix 37	37	C	58	68	Right-handed alpha
Helix 38	38	C	75	81	Right-handed alpha
Helix 39	39	C	120	125	Right-handed 310
Helix 40	40	C	126	130	Right-handed 310
Helix 41	41	C	139	154	Right-handed alpha
Helix 42	42	C	154	169	Right-handed alpha
Helix 43	43	C	174	184	Right-handed alpha
Helix 44	44	C	194	205	Right-handed alpha
Helix 45	45	C	206	209	Right-handed 310
Helix 46	46	C	220	223	Right-handed 310
Helix 47	47	C	238	251	Right-handed alpha
Helix 48	48	C	251	260	Right-handed alpha
Helix 49	49	C	279	284	Right-handed alpha
Helix 50	50	C	292	306	Right-handed alpha
Helix 51	51	D	9	25	Right-handed alpha
Helix 52	52	D	34	46	Right-handed alpha
Helix 53	53	D	47	49	Right-handed 310
Helix 54	54	D	58	68	Right-handed alpha
Helix 55	55	D	75	81	Right-handed alpha
Helix 56	56	D	113	117	Right-handed 310
Helix 57	57	D	120	125	Right-handed 310
Helix 58	58	D	126	130	Right-handed 310
Helix 59	59	D	139	154	Right-handed alpha
Helix 60	60	D	154	169	Right-handed alpha
Helix 61	61	D	174	184	Right-handed alpha
Helix 62	62	D	194	205	Right-handed alpha
Helix 63	63	D	206	209	Right-handed 310
Helix 64	64	D	220	223	Right-handed 310
Helix 65	65	D	238	251	Right-handed alpha
Helix 66	66	D	251	260	Right-handed alpha
Helix 67	67	D	279	284	Right-handed 310
Helix 68	68	D	292	305	Right-handed alpha
Helix 69	69	E	9	23	Right-handed alpha
Helix 70	70	E	34	46	Right-handed alpha
Helix 71	71	E	47	49	Right-handed 310
Helix 72	72	E	58	68	Right-handed alpha
Helix 73	73	E	75	81	Right-handed alpha
Helix 74	74	E	113	117	Right-handed 310
Helix 75	75	E	120	125	Right-handed 310
Helix 76	76	E	126	130	Right-handed 310
Helix 77	77	E	139	154	Right-handed alpha
Helix 78	78	E	154	169	Right-handed alpha
Helix 79	79	E	174	184	Right-handed alpha
Helix 80	80	E	194	205	Right-handed alpha
Helix 81	81	E	206	209	Right-handed 310
Helix 82	82	E	220	223	Right-handed 310
Helix 83	83	E	238	251	Right-handed alpha
Helix 84	84	E	251	259	Right-handed alpha
Helix 85	85	E	279	284	Right-handed 310
Helix 86	86	E	292	306	Right-handed alpha
Helix 87	87	F	9	25	Right-handed alpha
Helix 88	88	F	34	46	Right-handed alpha
Helix 89	89	F	47	49	Right-handed 310
Helix 90	90	F	58	68	Right-handed alpha
Helix 91	91	F	75	81	Right-handed alpha
Helix 92	92	F	120	125	Right-handed 310
Helix 93	93	F	126	130	Right-handed 310
Helix 94	94	F	139	154	Right-handed alpha
Helix 95	95	F	154	169	Right-handed alpha
Helix 96	96	F	174	183	Right-handed alpha
Helix 97	97	F	194	205	Right-handed alpha
Helix 98	98	F	206	209	Right-handed 310
Helix 99	99	F	220	223	Right-handed 310
Helix 100	100	F	238	251	Right-handed alpha
Helix 101	101	F	251	260	Right-handed alpha
Helix 102	102	F	279	284	Right-handed 310
Helix 103	103	F	292	306	Right-handed alpha
Helix 104	104	G	9	22	Right-handed alpha
Helix 105	105	G	34	46	Right-handed alpha
Helix 106	106	G	47	49	Right-handed 310
Helix 107	107	G	59	69	Right-handed alpha
Helix 108	108	G	75	81	Right-handed alpha
Helix 109	109	G	113	117	Right-handed 310
Helix 110	110	G	120	125	Right-handed 310
Helix 111	111	G	126	130	Right-handed 310
Helix 112	112	G	139	154	Right-handed alpha
Helix 113	113	G	154	169	Right-handed alpha
Helix 114	114	G	174	184	Right-handed alpha
Helix 115	115	G	194	205	Right-handed alpha
Helix 116	116	G	206	209	Right-handed 310
Helix 117	117	G	220	223	Right-handed 310
Helix 118	118	G	238	251	Right-handed alpha
Helix 119	119	G	251	260	Right-handed alpha
Helix 120	120	G	279	284	Right-handed 310
Helix 121	121	G	292	306	Right-handed alpha
Helix 122	122	H	9	25	Right-handed alpha
Helix 123	123	H	38	46	Right-handed alpha
Helix 124	124	H	47	49	Right-handed 310
Helix 125	125	H	58	64	Right-handed alpha
Helix 126	126	H	75	82	Right-handed alpha
Helix 127	127	H	113	117	Right-handed 310
Helix 128	128	H	139	154	Right-handed alpha
Helix 129	129	H	154	168	Right-handed alpha
Helix 130	130	H	174	184	Right-handed alpha
Helix 131	131	H	194	205	Right-handed alpha
Helix 132	132	H	206	209	Right-handed 310
Helix 133	133	H	220	223	Right-handed 310
Helix 134	134	H	238	250	Right-handed alpha
Helix 135	135	H	251	259	Right-handed alpha
Helix 136	136	H	279	284	Right-handed 310
Helix 137	137	H	292	306	Right-handed alpha
Helix 138	138	I	9	25	Right-handed alpha
Helix 139	139	I	34	46	Right-handed alpha
Helix 140	140	I	47	49	Right-handed 310
Helix 141	141	I	58	68	Right-handed alpha
Helix 142	142	I	75	81	Right-handed alpha
Helix 143	143	I	120	124	Right-handed 310
Helix 144	144	I	139	154	Right-handed alpha
Helix 145	145	I	154	169	Right-handed alpha
Helix 146	146	I	174	184	Right-handed alpha
Helix 147	147	I	194	205	Right-handed alpha
Helix 148	148	I	206	209	Right-handed 310
Helix 149	149	I	220	223	Right-handed 310
Helix 150	150	I	238	251	Right-handed alpha
Helix 151	151	I	251	259	Right-handed alpha
Helix 152	152	I	279	284	Right-handed 310
Helix 153	153	I	292	307	Right-handed alpha

There are 23 sheets in PDB entry 3TYH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	2	6	parallel
Strand 3	A	53	56	parallel
Strand 4	A	225	232	anti-parallel
Strand 5	A	96	108	anti-parallel
Strand 6	A	211	214	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	133	135	parallel
Strand 3	A	189	193	parallel
Strand 4	A	96	108	anti-parallel
Strand 5	A	265	266	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	2	6	parallel
Strand 3	B	53	56	parallel
Strand 4	B	225	233	anti-parallel
Strand 5	B	96	108	anti-parallel
Strand 6	B	265	266	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	225	233	anti-parallel
Strand 3	B	96	108	anti-parallel
Strand 4	B	189	193	anti-parallel
Strand 5	B	133	135	parallel
Strand 6	B	170	171	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	214	first strand
Strand 2	B	96	108	anti-parallel
Strand 3	B	265	266	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	2	6	parallel
Strand 3	C	53	56	parallel
Strand 4	C	225	232	anti-parallel
Strand 5	C	96	108	anti-parallel
Strand 6	C	211	214	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	133	135	parallel
Strand 3	C	189	193	parallel
Strand 4	C	96	108	anti-parallel
Strand 5	C	265	266	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	2	6	parallel
Strand 3	D	53	56	parallel
Strand 4	D	225	232	anti-parallel
Strand 5	D	96	108	anti-parallel
Strand 6	D	211	214	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	133	135	parallel
Strand 3	D	189	193	parallel
Strand 4	D	96	108	anti-parallel
Strand 5	D	265	266	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	32	first strand
Strand 2	E	2	6	parallel
Strand 3	E	53	56	parallel
Strand 4	E	225	233	anti-parallel
Strand 5	E	96	108	anti-parallel
Strand 6	E	265	266	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	225	233	anti-parallel
Strand 3	E	96	108	anti-parallel
Strand 4	E	189	193	anti-parallel
Strand 5	E	133	135	parallel
Strand 6	E	170	171	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	214	first strand
Strand 2	E	96	108	anti-parallel
Strand 3	E	265	266	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	32	first strand
Strand 2	F	2	6	parallel
Strand 3	F	53	56	parallel
Strand 4	F	225	232	anti-parallel
Strand 5	F	96	108	anti-parallel
Strand 6	F	211	214	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	133	135	parallel
Strand 3	F	189	193	parallel
Strand 4	F	96	108	anti-parallel
Strand 5	F	265	266	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	32	first strand
Strand 2	G	2	6	parallel
Strand 3	G	53	56	parallel
Strand 4	G	225	233	anti-parallel
Strand 5	G	96	108	anti-parallel
Strand 6	G	189	193	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	225	233	anti-parallel
Strand 3	G	96	108	anti-parallel
Strand 4	G	211	214	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	193	first strand
Strand 2	G	96	108	anti-parallel
Strand 3	G	265	266	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	135	first strand
Strand 2	G	170	171	parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	32	first strand
Strand 2	H	2	6	parallel
Strand 3	H	53	56	parallel
Strand 4	H	225	232	anti-parallel
Strand 5	H	95	108	anti-parallel
Strand 6	H	211	214	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	171	first strand
Strand 2	H	133	135	parallel
Strand 3	H	189	193	parallel
Strand 4	H	95	108	anti-parallel
Strand 5	H	265	266	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	32	first strand
Strand 2	I	2	6	parallel
Strand 3	I	53	56	parallel
Strand 4	I	225	233	anti-parallel
Strand 5	I	71	72	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	72	first strand
Strand 2	I	225	233	anti-parallel
Strand 3	I	95	108	anti-parallel
Strand 4	I	265	266	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	134	first strand
Strand 2	I	189	193	parallel
Strand 3	I	95	108	anti-parallel
Strand 4	I	211	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TYH