Analysis of interatomic Contacts of Structural Units in PDB entry:
3TYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TYW entry

There are 4 chains in PDB entry 3TYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 17HIS 413
B
 PRO 17HIS 413
C
 PRO 17HIS 414
D
 PRO 17HIS 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 3TYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 41Right-handed alpha
Helix 2
2
A
60 70Right-handed alpha
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
103 115Right-handed alpha
Helix 5
5
A
116 118Right-handed 310
Helix 6
6
A
119 126Right-handed alpha
Helix 7
7
A
126 145Right-handed alpha
Helix 8
8
A
150 154Right-handed alpha
Helix 9
9
A
154 168Right-handed alpha
Helix 10
10
A
175 186Right-handed alpha
Helix 11
11
A
192 214Right-handed alpha
Helix 12
12
A
219 228Right-handed alpha
Helix 13
13
A
235 268Right-handed alpha
Helix 14
14
A
269 278Right-handed alpha
Helix 15
15
A
281 294Right-handed alpha
Helix 16
16
A
324 329Right-handed alpha
Helix 17
17
A
362 381Right-handed alpha
Helix 18
18
B
33 41Right-handed alpha
Helix 19
19
B
60 70Right-handed alpha
Helix 20
20
B
89 94Right-handed 310
Helix 21
21
B
98 102Right-handed 310
Helix 22
22
B
104 115Right-handed alpha
Helix 23
23
B
116 118Right-handed 310
Helix 24
24
B
119 145Right-handed alpha
Helix 25
25
B
150 154Right-handed alpha
Helix 26
26
B
154 168Right-handed alpha
Helix 27
27
B
175 186Right-handed alpha
Helix 28
28
B
192 214Right-handed alpha
Helix 29
29
B
219 228Right-handed alpha
Helix 30
30
B
235 268Right-handed alpha
Helix 31
31
B
269 278Right-handed alpha
Helix 32
32
B
281 294Right-handed alpha
Helix 33
33
B
324 329Right-handed alpha
Helix 34
34
B
362 381Right-handed alpha
Helix 35
35
C
32 42Right-handed alpha
Helix 36
36
C
60 70Right-handed alpha
Helix 37
37
C
89 94Right-handed 310
Helix 38
38
C
98 102Right-handed 310
Helix 39
39
C
103 115Right-handed alpha
Helix 40
40
C
116 118Right-handed 310
Helix 41
41
C
119 145Right-handed alpha
Helix 42
42
C
150 154Right-handed alpha
Helix 43
43
C
154 168Right-handed alpha
Helix 44
44
C
175 186Right-handed alpha
Helix 45
45
C
190 214Right-handed alpha
Helix 46
46
C
219 228Right-handed alpha
Helix 47
47
C
235 268Right-handed alpha
Helix 48
48
C
269 278Right-handed alpha
Helix 49
49
C
280 294Right-handed alpha
Helix 50
50
C
324 329Right-handed alpha
Helix 51
51
C
362 381Right-handed alpha
Helix 52
52
D
32 42Right-handed alpha
Helix 53
53
D
60 69Right-handed alpha
Helix 54
54
D
90 94Right-handed 310
Helix 55
55
D
98 102Right-handed 310
Helix 56
56
D
103 115Right-handed alpha
Helix 57
57
D
116 118Right-handed 310
Helix 58
58
D
119 126Right-handed alpha
Helix 59
59
D
126 145Right-handed alpha
Helix 60
60
D
150 154Right-handed alpha
Helix 61
61
D
154 168Right-handed alpha
Helix 62
62
D
175 186Right-handed alpha
Helix 63
63
D
191 214Right-handed alpha
Helix 64
64
D
219 228Right-handed alpha
Helix 65
65
D
235 268Right-handed alpha
Helix 66
66
D
269 278Right-handed alpha
Helix 67
67
D
280 294Right-handed alpha
Helix 68
68
D
324 329Right-handed alpha
Helix 69
69
D
362 381Right-handed alpha
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There are 15 sheets in PDB entry 3TYW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
44 48parallel
Strand 3
A
54 58anti-parallel
Strand 4
A
320 323parallel
Strand 5
A
301 304anti-parallel
Strand 6
A
73 74anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
408 410anti-parallel
Strand 3
A
385 386anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
314 315anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
404 406anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
44 48parallel
Strand 3
B
54 58anti-parallel
Strand 4
B
319 323parallel
Strand 5
B
301 304anti-parallel
Strand 6
B
73 74anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
408 410anti-parallel
Strand 3
B
385 386anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
314 315anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 395first strand
Strand 2
B
404 406anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 48first strand
Strand 2
C
54 58anti-parallel
Strand 3
C
320 323parallel
Strand 4
C
301 304anti-parallel
Strand 5
C
73 74anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 149first strand
Strand 2
C
408 410anti-parallel
Strand 3
C
385 386anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
308 309first strand
Strand 2
C
314 315anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 48first strand
Strand 2
D
54 58anti-parallel
Strand 3
D
320 323parallel
Strand 4
D
301 304anti-parallel
Strand 5
D
73 74anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 149first strand
Strand 2
D
408 410anti-parallel
Strand 3
D
385 386anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
308 309first strand
Strand 2
D
314 315anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
394 395first strand
Strand 2
D
404 406anti-parallel
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