Analysis of interatomic Contacts of Structural Units in PDB entry:
3TZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TZV entry

There are 6 chains in PDB entry 3TZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	PHE 200
B	ALA 2	ALA 246
C	PHE 8	TRP 278
D	GLN 2	ARG 97
G	ASN 1	SER 203
H	ALA 2	ALA 246

There are 14 helices in PDB entry 3TZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	80	84	Right-handed 310
Helix 2	2	A	185	190	Right-handed alpha
Helix 3	3	B	82	86	Right-handed 310
Helix 4	4	B	134	142	Right-handed alpha
Helix 5	5	B	201	205	Right-handed alpha
Helix 6	6	C	59	89	Right-handed alpha
Helix 7	7	C	140	151	Right-handed alpha
Helix 8	8	C	151	165	Right-handed alpha
Helix 9	9	C	165	182	Right-handed alpha
Helix 10	10	G	80	84	Right-handed 310
Helix 11	11	G	185	190	Right-handed alpha
Helix 12	12	H	82	86	Right-handed 310
Helix 13	13	H	134	142	Right-handed alpha
Helix 14	14	H	201	205	Right-handed alpha

There are 27 sheets in PDB entry 3TZV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	61	66	anti-parallel
Strand 5	A	55	58	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	107	112	anti-parallel
Strand 5	A	9	13	parallel
Strand 6	G	9	13	anti-parallel
Strand 7	G	107	112	parallel
Strand 8	G	85	92	anti-parallel
Strand 9	G	31	37	anti-parallel
Strand 10	G	44	50	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	85	92	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	9	13	parallel
Strand 5	G	9	13	anti-parallel
Strand 6	G	107	112	parallel
Strand 7	G	85	92	anti-parallel
Strand 8	G	101	103	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	155	157	anti-parallel
Strand 5	A	150	152	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	161	165	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	76	78	anti-parallel
Strand 4	B	64	66	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	112	117	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	31	37	anti-parallel
Strand 5	B	44	49	anti-parallel
Strand 6	B	56	57	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	112	117	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	106	108	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	191	200	anti-parallel
Strand 4	B	173	175	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	191	200	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	158	164	anti-parallel
Strand 3	B	210	217	anti-parallel
Strand 4	B	236	243	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	24	32	anti-parallel
Strand 4	C	10	18	anti-parallel
Strand 5	C	94	103	anti-parallel
Strand 6	C	111	118	anti-parallel
Strand 7	C	122	127	anti-parallel
Strand 8	C	130	133	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	192	first strand
Strand 2	C	204	212	anti-parallel
Strand 3	C	244	251	anti-parallel
Strand 4	C	232	233	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	192	first strand
Strand 2	C	204	212	anti-parallel
Strand 3	C	244	251	anti-parallel
Strand 4	C	237	238	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	261	265	anti-parallel
Strand 3	C	274	277	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	22	30	anti-parallel
Strand 3	D	62	69	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	22	30	anti-parallel
Strand 3	D	62	69	anti-parallel
Strand 4	D	55	56	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	41	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	91	94	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	71	76	anti-parallel
Strand 4	G	61	66	anti-parallel
Strand 5	G	55	58	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	125	first strand
Strand 2	G	135	139	anti-parallel
Strand 3	G	170	178	anti-parallel
Strand 4	G	156	157	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	125	first strand
Strand 2	G	135	139	anti-parallel
Strand 3	G	170	178	anti-parallel
Strand 4	G	161	165	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	76	78	anti-parallel
Strand 4	H	64	66	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	112	117	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	31	37	anti-parallel
Strand 5	H	44	49	anti-parallel
Strand 6	H	56	57	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	112	117	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	106	108	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	180	181	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	168	first strand
Strand 2	H	158	164	anti-parallel
Strand 3	H	210	217	anti-parallel
Strand 4	H	236	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TZV