Analysis of interatomic Contacts of Structural Units in PDB entry:
3U06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U06 entry

There are 2 chains in PDB entry 3U06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 292MET 672
B
 GLY 290ILE 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3U06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
292 346Right-handed alpha
Helix 2
2
A
359 363Right-handed 310
Helix 3
3
A
407 413Right-handed alpha
Helix 4
4
A
415 424Right-handed alpha
Helix 5
5
A
439 445Right-handed alpha
Helix 6
6
A
452 469Right-handed alpha
Helix 7
7
A
524 539Right-handed alpha
Helix 8
8
A
547 551Right-handed alpha
Helix 9
9
A
600 615Right-handed alpha
Helix 10
10
A
621 624Right-handed 310
Helix 11
11
A
625 632Right-handed alpha
Helix 12
12
A
633 635Right-handed 310
Helix 13
13
A
650 652Right-handed 310
Helix 14
14
A
653 671Right-handed alpha
Helix 15
15
B
291 347Right-handed alpha
Helix 16
16
B
360 365Right-handed 310
Helix 17
17
B
388 392Right-handed 310
Helix 18
18
B
407 414Right-handed alpha
Helix 19
19
B
415 423Right-handed alpha
Helix 20
20
B
439 445Right-handed alpha
Helix 21
21
B
452 472Right-handed alpha
Helix 22
22
B
524 538Right-handed alpha
Helix 23
23
B
600 616Right-handed alpha
Helix 24
24
B
621 624Right-handed 310
Helix 25
25
B
625 632Right-handed alpha
Helix 26
26
B
650 652Right-handed 310
Helix 27
27
B
653 668Right-handed alpha
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There are 9 sheets in PDB entry 3U06. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
349 355parallel
Strand 3
A
640 647parallel
Strand 4
A
428 433parallel
Strand 5
A
570 580parallel
Strand 6
A
554 565anti-parallel
Strand 7
A
473 485anti-parallel
Strand 8
A
488 491anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
349 355parallel
Strand 3
A
640 647parallel
Strand 4
A
428 433parallel
Strand 5
A
570 580parallel
Strand 6
A
554 565anti-parallel
Strand 7
A
473 485anti-parallel
Strand 8
A
520 521anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
395 397anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
450 451anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 504first strand
Strand 2
A
512 514anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
350 355parallel
Strand 3
B
641 647parallel
Strand 4
B
427 433parallel
Strand 5
B
571 580parallel
Strand 6
B
554 564anti-parallel
Strand 7
B
474 485anti-parallel
Strand 8
B
488 491anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
350 355parallel
Strand 3
B
641 647parallel
Strand 4
B
427 433parallel
Strand 5
B
571 580parallel
Strand 6
B
554 564anti-parallel
Strand 7
B
474 485anti-parallel
Strand 8
B
520 521anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
377 381anti-parallel
Strand 3
B
395 397anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 447first strand
Strand 2
B
450 451anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il