Analysis of interatomic Contacts of Structural Units in PDB entry:
3U07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U07 entry

There are 3 chains in PDB entry 3U07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 25LYS 435
B
 THR 25LYS 435
C
 THR 25LYS 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3U07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 51Right-handed alpha
Helix 2
2
A
126 130Right-handed alpha
Helix 3
3
A
172 184Right-handed alpha
Helix 4
4
A
191 196Right-handed alpha
Helix 5
5
A
214 225Right-handed alpha
Helix 6
6
A
227 232Right-handed alpha
Helix 7
7
A
232 240Right-handed alpha
Helix 8
8
A
241 243Right-handed 310
Helix 9
9
A
252 274Right-handed alpha
Helix 10
10
A
275 277Right-handed 310
Helix 11
11
A
279 283Right-handed 310
Helix 12
12
A
286 291Right-handed alpha
Helix 13
13
A
294 306Right-handed alpha
Helix 14
14
A
418 423Right-handed alpha
Helix 15
15
B
26 51Right-handed alpha
Helix 16
16
B
126 130Right-handed alpha
Helix 17
17
B
174 184Right-handed alpha
Helix 18
18
B
191 196Right-handed alpha
Helix 19
19
B
209 213Right-handed 310
Helix 20
20
B
214 225Right-handed alpha
Helix 21
21
B
227 232Right-handed alpha
Helix 22
22
B
232 240Right-handed alpha
Helix 23
23
B
241 243Right-handed 310
Helix 24
24
B
252 274Right-handed alpha
Helix 25
25
B
275 277Right-handed 310
Helix 26
26
B
279 283Right-handed 310
Helix 27
27
B
286 291Right-handed alpha
Helix 28
28
B
294 306Right-handed alpha
Helix 29
29
B
418 423Right-handed alpha
Helix 30
30
C
26 50Right-handed alpha
Helix 31
31
C
126 130Right-handed alpha
Helix 32
32
C
172 184Right-handed alpha
Helix 33
33
C
191 196Right-handed alpha
Helix 34
34
C
209 213Right-handed 310
Helix 35
35
C
214 225Right-handed alpha
Helix 36
36
C
227 232Right-handed alpha
Helix 37
37
C
232 239Right-handed alpha
Helix 38
38
C
240 243Right-handed 310
Helix 39
39
C
252 274Right-handed alpha
Helix 40
40
C
275 277Right-handed 310
Helix 41
41
C
279 283Right-handed 310
Helix 42
42
C
286 291Right-handed alpha
Helix 43
43
C
294 306Right-handed alpha
Helix 44
44
C
418 423Right-handed alpha
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There are 12 sheets in PDB entry 3U07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 90first strand
Strand 2
A
161 169anti-parallel
Strand 3
A
109 115anti-parallel
Strand 4
A
120 125anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
134 140parallel
Strand 3
A
96 100anti-parallel
Strand 4
A
187 190anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
408 417anti-parallel
Strand 3
A
344 354anti-parallel
Strand 4
A
369 371anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
382 388parallel
Strand 3
A
334 340anti-parallel
Strand 4
A
432 434anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 90first strand
Strand 2
B
161 169anti-parallel
Strand 3
B
109 115anti-parallel
Strand 4
B
120 125anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
134 140parallel
Strand 3
B
96 100anti-parallel
Strand 4
B
187 190anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 319first strand
Strand 2
B
408 417anti-parallel
Strand 3
B
344 354anti-parallel
Strand 4
B
369 371anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
382 388parallel
Strand 3
B
334 340anti-parallel
Strand 4
B
432 434anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 90first strand
Strand 2
C
161 169anti-parallel
Strand 3
C
109 115anti-parallel
Strand 4
C
120 125anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 157first strand
Strand 2
C
134 140parallel
Strand 3
C
96 100anti-parallel
Strand 4
C
187 190anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
315 319first strand
Strand 2
C
408 417anti-parallel
Strand 3
C
344 354anti-parallel
Strand 4
C
369 371anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
400 402first strand
Strand 2
C
382 388parallel
Strand 3
C
335 340anti-parallel
Strand 4
C
432 433anti-parallel
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