Analysis of interatomic Contacts of Structural Units in PDB entry:
3U0G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3U0G entry

There are 5 chains in PDB entry 3U0G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 307
B	SER 2	ILE 307
C	SER 2	ILE 307
D	SER 2	ILE 307
E	SER 2	SER 96

There are 57 helices in PDB entry 3U0G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	34	Right-handed alpha
Helix 2	2	A	55	70	Right-handed alpha
Helix 3	3	A	77	92	Right-handed alpha
Helix 4	4	A	134	140	Right-handed alpha
Helix 5	5	A	162	164	Right-handed 310
Helix 6	6	A	165	179	Right-handed alpha
Helix 7	7	A	220	233	Right-handed alpha
Helix 8	8	A	243	249	Right-handed alpha
Helix 9	9	A	279	294	Right-handed alpha
Helix 10	10	A	300	302	Right-handed 310
Helix 11	11	B	28	34	Right-handed alpha
Helix 12	12	B	55	70	Right-handed alpha
Helix 13	13	B	77	92	Right-handed alpha
Helix 14	14	B	162	164	Right-handed 310
Helix 15	15	B	165	179	Right-handed alpha
Helix 16	16	B	220	233	Right-handed alpha
Helix 17	17	B	243	249	Right-handed alpha
Helix 18	18	B	279	294	Right-handed alpha
Helix 19	19	B	300	302	Right-handed 310
Helix 20	20	C	28	34	Right-handed alpha
Helix 21	21	C	55	70	Right-handed alpha
Helix 22	22	C	77	92	Right-handed alpha
Helix 23	23	C	162	164	Right-handed 310
Helix 24	24	C	165	179	Right-handed alpha
Helix 25	25	C	220	233	Right-handed alpha
Helix 26	26	C	243	249	Right-handed alpha
Helix 27	27	C	279	294	Right-handed alpha
Helix 28	28	C	300	302	Right-handed 310
Helix 29	29	D	28	34	Right-handed alpha
Helix 30	30	D	55	70	Right-handed alpha
Helix 31	31	D	77	92	Right-handed alpha
Helix 32	32	D	162	164	Right-handed 310
Helix 33	33	D	165	179	Right-handed alpha
Helix 34	34	D	220	233	Right-handed alpha
Helix 35	35	D	243	249	Right-handed alpha
Helix 36	36	D	279	294	Right-handed alpha
Helix 37	37	D	300	302	Right-handed 310
Helix 38	38	E	28	34	Right-handed alpha
Helix 39	39	E	55	70	Right-handed alpha
Helix 40	40	E	77	92	Right-handed alpha
Helix 41	41	E	134	140	Right-handed alpha
Helix 42	42	E	162	164	Right-handed 310
Helix 43	43	E	165	179	Right-handed alpha
Helix 44	44	E	220	233	Right-handed alpha
Helix 45	45	E	243	249	Right-handed alpha
Helix 46	46	E	279	294	Right-handed alpha
Helix 47	47	E	297	302	Right-handed 310
Helix 48	48	F	28	34	Right-handed alpha
Helix 49	49	F	55	70	Right-handed alpha
Helix 50	50	F	77	92	Right-handed alpha
Helix 51	51	F	129	140	Right-handed alpha
Helix 52	52	F	162	164	Right-handed 310
Helix 53	53	F	165	179	Right-handed alpha
Helix 54	54	F	220	233	Right-handed alpha
Helix 55	55	F	243	249	Right-handed alpha
Helix 56	56	F	279	294	Right-handed alpha
Helix 57	57	F	300	302	Right-handed 310

There are 28 sheets in PDB entry 3U0G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	9	12	anti-parallel
Strand 3	A	119	127	anti-parallel
Strand 4	A	97	105	anti-parallel
Strand 5	A	36	38	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	9	12	anti-parallel
Strand 3	A	119	127	anti-parallel
Strand 4	A	97	105	anti-parallel
Strand 5	A	41	45	anti-parallel
Strand 6	A	51	54	anti-parallel
Strand 7	A	304	306	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	B	23	25	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	208	211	parallel
Strand 3	A	200	205	anti-parallel
Strand 4	A	193	196	anti-parallel
Strand 5	A	183	187	anti-parallel
Strand 6	A	141	145	parallel
Strand 7	A	261	268	parallel
Strand 8	A	271	272	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	208	211	parallel
Strand 3	A	200	205	anti-parallel
Strand 4	A	252	257	anti-parallel
Strand 5	A	261	268	anti-parallel
Strand 6	A	271	272	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	9	12	anti-parallel
Strand 3	B	119	127	anti-parallel
Strand 4	B	97	105	anti-parallel
Strand 5	B	36	38	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	9	12	anti-parallel
Strand 3	B	119	127	anti-parallel
Strand 4	B	97	105	anti-parallel
Strand 5	B	41	45	anti-parallel
Strand 6	B	51	54	anti-parallel
Strand 7	B	304	306	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	141	145	parallel
Strand 4	B	261	268	parallel
Strand 5	B	252	257	anti-parallel
Strand 6	B	200	205	anti-parallel
Strand 7	B	208	212	anti-parallel
Strand 8	B	237	240	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	141	145	parallel
Strand 4	B	261	268	parallel
Strand 5	B	271	272	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	9	12	anti-parallel
Strand 3	C	119	127	anti-parallel
Strand 4	C	97	105	anti-parallel
Strand 5	C	36	38	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	9	12	anti-parallel
Strand 3	C	119	127	anti-parallel
Strand 4	C	97	105	anti-parallel
Strand 5	C	41	45	anti-parallel
Strand 6	C	51	54	anti-parallel
Strand 7	C	304	306	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	D	23	25	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	183	187	anti-parallel
Strand 3	C	141	145	parallel
Strand 4	C	261	268	parallel
Strand 5	C	252	257	anti-parallel
Strand 6	C	200	205	anti-parallel
Strand 7	C	208	212	anti-parallel
Strand 8	C	237	240	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	183	187	anti-parallel
Strand 3	C	141	145	parallel
Strand 4	C	261	268	parallel
Strand 5	C	271	272	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	9	12	anti-parallel
Strand 3	D	119	127	anti-parallel
Strand 4	D	97	105	anti-parallel
Strand 5	D	37	38	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	9	12	anti-parallel
Strand 3	D	119	127	anti-parallel
Strand 4	D	97	105	anti-parallel
Strand 5	D	41	45	anti-parallel
Strand 6	D	51	54	anti-parallel
Strand 7	D	304	306	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	208	211	parallel
Strand 3	D	200	205	anti-parallel
Strand 4	D	193	196	anti-parallel
Strand 5	D	183	187	anti-parallel
Strand 6	D	141	145	parallel
Strand 7	D	261	268	parallel
Strand 8	D	271	272	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	208	211	parallel
Strand 3	D	200	205	anti-parallel
Strand 4	D	252	257	anti-parallel
Strand 5	D	261	268	anti-parallel
Strand 6	D	271	272	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	18	first strand
Strand 2	E	9	12	anti-parallel
Strand 3	E	119	127	anti-parallel
Strand 4	E	97	105	anti-parallel
Strand 5	E	37	38	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	18	first strand
Strand 2	E	9	12	anti-parallel
Strand 3	E	119	127	anti-parallel
Strand 4	E	97	105	anti-parallel
Strand 5	E	41	43	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	F	23	25	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	304	305	anti-parallel

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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	196	first strand
Strand 2	E	183	187	anti-parallel
Strand 3	E	141	145	parallel
Strand 4	E	261	268	parallel
Strand 5	E	252	257	anti-parallel
Strand 6	E	200	205	anti-parallel
Strand 7	E	208	212	anti-parallel
Strand 8	E	237	240	parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	196	first strand
Strand 2	E	183	187	anti-parallel
Strand 3	E	141	145	parallel
Strand 4	E	261	268	parallel
Strand 5	E	271	272	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	18	first strand
Strand 2	F	9	12	anti-parallel
Strand 3	F	119	127	anti-parallel
Strand 4	F	97	105	anti-parallel
Strand 5	F	36	38	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	18	first strand
Strand 2	F	9	12	anti-parallel
Strand 3	F	119	127	anti-parallel
Strand 4	F	97	105	anti-parallel
Strand 5	F	41	45	anti-parallel
Strand 6	F	51	54	anti-parallel
Strand 7	F	304	305	anti-parallel

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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	240	first strand
Strand 2	F	208	212	parallel
Strand 3	F	200	205	anti-parallel
Strand 4	F	193	196	anti-parallel
Strand 5	F	183	187	anti-parallel
Strand 6	F	141	145	parallel
Strand 7	F	261	268	parallel
Strand 8	F	271	272	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	237	240	first strand
Strand 2	F	208	212	parallel
Strand 3	F	200	205	anti-parallel
Strand 4	F	252	257	anti-parallel
Strand 5	F	261	268	anti-parallel
Strand 6	F	271	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3U0G

Analysis of interatomic Contacts of Structural Units in PDB entry:
3U0G