Analysis of interatomic Contacts of Structural Units in PDB entry:
3U0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U0H entry

There are 2 chains in PDB entry 3U0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLY 278
B
 ALA 0GLY 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3U0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
14 25Right-handed alpha
Helix 3
3
A
33 45Right-handed alpha
Helix 4
4
A
45 55Right-handed alpha
Helix 5
5
A
72 82Right-handed alpha
Helix 6
6
A
82 93Right-handed alpha
Helix 7
7
A
109 129Right-handed alpha
Helix 8
8
A
130 132Right-handed 310
Helix 9
9
A
142 146Right-handed 310
Helix 10
10
A
155 167Right-handed alpha
Helix 11
11
A
177 183Right-handed alpha
Helix 12
12
A
186 192Right-handed alpha
Helix 13
13
A
194 196Right-handed 310
Helix 14
14
A
227 239Right-handed alpha
Helix 15
15
A
257 278Right-handed alpha
Helix 16
16
B
6 10Right-handed 310
Helix 17
17
B
14 25Right-handed alpha
Helix 18
18
B
33 44Right-handed alpha
Helix 19
19
B
45 56Right-handed alpha
Helix 20
20
B
72 93Right-handed alpha
Helix 21
21
B
109 129Right-handed alpha
Helix 22
22
B
130 132Right-handed 310
Helix 23
23
B
142 147Right-handed 310
Helix 24
24
B
155 167Right-handed alpha
Helix 25
25
B
177 183Right-handed alpha
Helix 26
26
B
186 192Right-handed alpha
Helix 27
27
B
194 196Right-handed 310
Helix 28
28
B
227 239Right-handed alpha
Helix 29
29
B
257 277Right-handed alpha
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There are 4 sheets in PDB entry 3U0H. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
29 30parallel
Strand 3
A
2 5parallel
Strand 4
A
243 246parallel
Strand 5
A
198 203parallel
Strand 6
A
171 176parallel
Strand 7
A
134 138parallel
Strand 8
A
97 101parallel
Strand 9
A
63 64parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
150 151anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
29 30parallel
Strand 3
B
2 5parallel
Strand 4
B
243 245parallel
Strand 5
B
198 202parallel
Strand 6
B
171 176parallel
Strand 7
B
134 138parallel
Strand 8
B
97 101parallel
Strand 9
B
63 64parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
150 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il