Analysis of interatomic Contacts of Structural Units in PDB entry:
3U0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U0J entry

There are 2 chains in PDB entry 3U0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 29ILE 264
A
 GLU 29ILE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3U0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
34 47Right-handed alpha
Helix 2
2
B
58 66Right-handed alpha
Helix 3
3
B
68 75Right-handed alpha
Helix 4
4
B
76 79Right-handed 310
Helix 5
5
B
82 94Right-handed alpha
Helix 6
6
B
109 121Right-handed alpha
Helix 7
7
B
127 134Right-handed 310
Helix 8
8
B
138 157Right-handed alpha
Helix 9
9
B
169 183Right-handed alpha
Helix 10
10
B
197 202Right-handed 310
Helix 11
11
B
230 233Right-handed 310
Helix 12
12
A
34 47Right-handed alpha
Helix 13
13
A
58 68Right-handed alpha
Helix 14
14
A
68 75Right-handed alpha
Helix 15
15
A
76 81Right-handed 310
Helix 16
16
A
82 93Right-handed alpha
Helix 17
17
A
109 121Right-handed alpha
Helix 18
18
A
138 157Right-handed alpha
Helix 19
19
A
169 183Right-handed alpha
Helix 20
20
A
197 202Right-handed 310
Helix 21
21
A
225 228Right-handed 310
Helix 22
22
A
230 233Right-handed 310
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There are 6 sheets in PDB entry 3U0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
97 98anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
105 106anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
242 251anti-parallel
Strand 3
B
257 263anti-parallel
Strand 4
B
212 223parallel
Strand 5
B
235 237anti-parallel
Strand 6
B
193 195anti-parallel
Strand 7
B
158 166anti-parallel
Strand 8
B
212 223anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
97 98anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
105 106anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
242 253anti-parallel
Strand 3
A
256 263anti-parallel
Strand 4
A
212 223parallel
Strand 5
A
235 237anti-parallel
Strand 6
A
193 195anti-parallel
Strand 7
A
158 166anti-parallel
Strand 8
A
212 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il