Analysis of interatomic Contacts of Structural Units in PDB entry:
3U0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U0K entry

There are 2 chains in PDB entry 3U0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 35SER 212
A
 SER 217THR 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3U0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
37 54Right-handed alpha
Helix 2
2
B
124 126Right-handed 310
Helix 3
3
B
205 210Right-handed 310
Helix 4
4
A
229 234Right-handed alpha
Helix 5
5
A
299 314Right-handed alpha
Helix 6
6
A
322 333Right-handed alpha
Helix 7
7
A
338 350Right-handed alpha
Helix 8
8
A
359 368Right-handed alpha
Helix 9
9
A
377 387Right-handed alpha
Helix 10
10
A
395 407Right-handed alpha
Helix 11
11
A
411 423Right-handed alpha
Helix 12
12
A
432 440Right-handed alpha
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There are 3 sheets in PDB entry 3U0K. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
B
71 82anti-parallel
Strand 3
B
87 98anti-parallel
Strand 4
A
239 247anti-parallel
Strand 5
A
252 262anti-parallel
Strand 6
A
265 275anti-parallel
Strand 7
B
160 170parallel
Strand 8
B
173 184anti-parallel
Strand 9
B
189 198anti-parallel
Strand 10
B
128 138anti-parallel
Strand 11
B
111 122anti-parallel
Strand 12
B
62 68anti-parallel
Strand 13
B
71 82anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
357 358anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
430 431anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il