Analysis of interatomic Contacts of Structural Units in PDB entry:
3U0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U0Z entry

There are 2 chains in PDB entry 3U0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 390SER 588
B
 ASP 390SER 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3U0Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
390 411Right-handed alpha
Helix 2
2
A
413 429Right-handed alpha
Helix 3
3
A
434 441Right-handed alpha
Helix 4
4
A
443 455Right-handed alpha
Helix 5
5
A
455 461Right-handed alpha
Helix 6
6
A
462 467Right-handed alpha
Helix 7
7
A
469 479Right-handed alpha
Helix 8
8
A
528 535Right-handed alpha
Helix 9
9
A
555 565Right-handed alpha
Helix 10
10
A
566 584Right-handed alpha
Helix 11
11
B
391 411Right-handed alpha
Helix 12
12
B
413 429Right-handed alpha
Helix 13
13
B
434 441Right-handed alpha
Helix 14
14
B
443 455Right-handed alpha
Helix 15
15
B
455 461Right-handed alpha
Helix 16
16
B
462 467Right-handed alpha
Helix 17
17
B
469 480Right-handed alpha
Helix 18
18
B
528 535Right-handed alpha
Helix 19
19
B
555 565Right-handed alpha
Helix 20
20
B
566 583Right-handed alpha
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There are 4 sheets in PDB entry 3U0Z. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 485first strand
Strand 2
A
548 554anti-parallel
Strand 3
A
500 506anti-parallel
Strand 4
A
526 527anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 492first strand
Strand 2
A
541 544anti-parallel
Strand 3
A
509 512anti-parallel
Strand 4
A
519 521anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 485first strand
Strand 2
B
548 554anti-parallel
Strand 3
B
500 506anti-parallel
Strand 4
B
526 527anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 492first strand
Strand 2
B
541 544anti-parallel
Strand 3
B
509 512anti-parallel
Strand 4
B
519 521anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il