Analysis of interatomic Contacts of Structural Units in PDB entry:
3U11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U11 entry

There are 4 chains in PDB entry 3U11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 521ASN 585
A
 ARG 587ASN 718
B
 ASP 521ASN 585
B
 ARG 587LEU 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3U11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
521 541Right-handed alpha
Helix 2
2
A
544 560Right-handed alpha
Helix 3
3
A
565 572Right-handed alpha
Helix 4
4
A
574 586Right-handed alpha
Helix 5
5
A
586 593Right-handed alpha
Helix 6
6
A
593 598Right-handed alpha
Helix 7
7
A
600 609Right-handed alpha
Helix 8
8
A
659 666Right-handed alpha
Helix 9
9
A
686 696Right-handed alpha
Helix 10
10
A
699 714Right-handed alpha
Helix 11
11
B
522 541Right-handed alpha
Helix 12
12
B
544 560Right-handed alpha
Helix 13
13
B
565 573Right-handed alpha
Helix 14
14
B
574 586Right-handed alpha
Helix 15
15
B
586 593Right-handed alpha
Helix 16
16
B
600 610Right-handed alpha
Helix 17
17
B
659 666Right-handed alpha
Helix 18
18
B
686 696Right-handed alpha
Helix 19
19
B
698 715Right-handed alpha
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There are 4 sheets in PDB entry 3U11. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 616first strand
Strand 2
A
679 685anti-parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
657 658anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 623first strand
Strand 2
A
672 675anti-parallel
Strand 3
A
639 644anti-parallel
Strand 4
A
647 653anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 616first strand
Strand 2
B
679 685anti-parallel
Strand 3
B
631 637anti-parallel
Strand 4
B
657 658anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
621 623first strand
Strand 2
B
672 675anti-parallel
Strand 3
B
640 644anti-parallel
Strand 4
B
647 652anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il