Analysis of interatomic Contacts of Structural Units in PDB entry:
3U39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U39 entry

There are 4 chains in PDB entry 3U39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 319
B
 MET 1SER 318
C
 MET 1ILE 319
D
 MET 1ILE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 3U39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
39 47Right-handed alpha
Helix 3
3
A
53 57Right-handed 310
Helix 4
4
A
73 77Right-handed 310
Helix 5
5
A
78 92Right-handed alpha
Helix 6
6
A
105 115Right-handed alpha
Helix 7
7
A
138 161Right-handed alpha
Helix 8
8
A
174 184Right-handed alpha
Helix 9
9
A
197 212Right-handed alpha
Helix 10
10
A
226 236Right-handed alpha
Helix 11
11
A
248 253Right-handed 310
Helix 12
12
A
257 277Right-handed alpha
Helix 13
13
A
296 300Right-handed alpha
Helix 14
14
A
307 317Right-handed alpha
Helix 15
15
B
15 30Right-handed alpha
Helix 16
16
B
39 47Right-handed alpha
Helix 17
17
B
74 77Right-handed 310
Helix 18
18
B
78 92Right-handed alpha
Helix 19
19
B
104 115Right-handed alpha
Helix 20
20
B
138 161Right-handed alpha
Helix 21
21
B
174 184Right-handed alpha
Helix 22
22
B
197 211Right-handed alpha
Helix 23
23
B
223 225Right-handed 310
Helix 24
24
B
226 239Right-handed alpha
Helix 25
25
B
248 253Right-handed 310
Helix 26
26
B
257 277Right-handed alpha
Helix 27
27
B
296 300Right-handed alpha
Helix 28
28
B
307 317Right-handed alpha
Helix 29
29
C
15 30Right-handed alpha
Helix 30
30
C
39 47Right-handed alpha
Helix 31
31
C
53 57Right-handed 310
Helix 32
32
C
73 77Right-handed 310
Helix 33
33
C
78 92Right-handed alpha
Helix 34
34
C
103 115Right-handed alpha
Helix 35
35
C
138 161Right-handed alpha
Helix 36
36
C
174 185Right-handed alpha
Helix 37
37
C
197 211Right-handed alpha
Helix 38
38
C
226 239Right-handed alpha
Helix 39
39
C
248 253Right-handed 310
Helix 40
40
C
257 277Right-handed alpha
Helix 41
41
C
296 300Right-handed alpha
Helix 42
42
C
307 317Right-handed alpha
Helix 43
43
D
15 30Right-handed alpha
Helix 44
44
D
39 47Right-handed alpha
Helix 45
45
D
73 77Right-handed 310
Helix 46
46
D
78 92Right-handed alpha
Helix 47
47
D
105 115Right-handed alpha
Helix 48
48
D
138 161Right-handed alpha
Helix 49
49
D
174 184Right-handed alpha
Helix 50
50
D
197 211Right-handed alpha
Helix 51
51
D
226 239Right-handed alpha
Helix 52
52
D
248 253Right-handed 310
Helix 53
53
D
257 277Right-handed alpha
Helix 54
54
D
296 300Right-handed alpha
Helix 55
55
D
307 317Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3U39. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
97 101parallel
Strand 5
A
119 123parallel
Strand 6
A
282 287parallel
Strand 7
A
290 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
216 221parallel
Strand 3
A
163 168parallel
Strand 4
A
242 246parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
33 37anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
96 101parallel
Strand 5
B
119 123parallel
Strand 6
B
282 287parallel
Strand 7
B
290 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
216 221parallel
Strand 3
B
163 168parallel
Strand 4
B
242 246parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 51first strand
Strand 2
C
33 37anti-parallel
Strand 3
C
3 9parallel
Strand 4
C
97 101parallel
Strand 5
C
119 123parallel
Strand 6
C
282 287parallel
Strand 7
C
290 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 190first strand
Strand 2
C
216 221parallel
Strand 3
C
163 168parallel
Strand 4
C
242 246parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 51first strand
Strand 2
D
33 37anti-parallel
Strand 3
D
3 9parallel
Strand 4
D
97 101parallel
Strand 5
D
119 123parallel
Strand 6
D
282 287parallel
Strand 7
D
290 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 190first strand
Strand 2
D
216 221parallel
Strand 3
D
163 168parallel
Strand 4
D
242 246parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il