Analysis of interatomic Contacts of Structural Units in PDB entry:
3U3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U3M entry

There is 1 chain in PDB entry 3U3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3U3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 32Right-handed alpha
Helix 2
2
A
50 63Right-handed alpha
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
74 79Right-handed alpha
Helix 5
5
A
91 97Right-handed alpha
Helix 6
6
A
115 121Right-handed alpha
Helix 7
7
A
131 146Right-handed alpha
Helix 8
8
A
154 164Right-handed alpha
Helix 9
9
A
171 183Right-handed alpha
Helix 10
10
A
193 199Right-handed alpha
Helix 11
11
A
199 212Right-handed alpha
Helix 12
12
A
216 227Right-handed alpha
Helix 13
13
A
228 235Right-handed alpha
Helix 14
14
A
262 267Right-handed 310
Helix 15
15
A
269 284Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3U3M. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
18 20anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
41 45parallel
Strand 3
A
124 129parallel
Strand 4
A
188 192parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il