Analysis of interatomic Contacts of Structural Units in PDB entry:
3U58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3U58 entry

There are 8 chains in PDB entry 3U58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 203	ASP 469
B	SER 204	SER 467
C	GLY 203	SER 467
D	SER 204	SER 467
E	G 1	T 4
H	G 1	T 4
F	G 1	T 4
G	G 1	T 4

There are 19 helices in PDB entry 3U58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	204	209	Right-handed alpha
Helix 2	2	A	215	219	Right-handed 310
Helix 3	3	A	269	277	Right-handed alpha
Helix 4	4	A	377	382	Right-handed alpha
Helix 5	5	A	427	431	Right-handed 310
Helix 6	6	B	205	211	Right-handed alpha
Helix 7	7	B	215	219	Right-handed 310
Helix 8	8	B	269	277	Right-handed alpha
Helix 9	9	B	377	382	Right-handed alpha
Helix 10	10	B	427	431	Right-handed 310
Helix 11	11	C	204	210	Right-handed alpha
Helix 12	12	C	269	277	Right-handed alpha
Helix 13	13	C	377	384	Right-handed alpha
Helix 14	14	C	427	431	Right-handed 310
Helix 15	15	D	205	211	Right-handed alpha
Helix 16	16	D	215	219	Right-handed 310
Helix 17	17	D	269	277	Right-handed alpha
Helix 18	18	D	377	382	Right-handed alpha
Helix 19	19	D	427	431	Right-handed 310

There are 14 sheets in PDB entry 3U58. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	228	237	parallel
Strand 3	A	250	255	anti-parallel
Strand 4	A	261	266	anti-parallel
Strand 5	A	297	301	parallel
Strand 6	A	289	292	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	228	237	parallel
Strand 3	A	282	286	anti-parallel
Strand 4	A	307	310	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	466	first strand
Strand 2	A	439	447	anti-parallel
Strand 3	A	455	457	anti-parallel
Strand 4	A	418	422	parallel
Strand 5	A	405	410	anti-parallel
Strand 6	A	388	400	anti-parallel
Strand 7	A	439	447	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	228	237	parallel
Strand 3	B	250	255	anti-parallel
Strand 4	B	261	266	anti-parallel
Strand 5	B	297	301	parallel
Strand 6	B	289	292	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	228	237	parallel
Strand 3	B	282	286	anti-parallel
Strand 4	B	307	310	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	466	first strand
Strand 2	B	439	449	anti-parallel
Strand 3	B	454	457	anti-parallel
Strand 4	B	418	422	parallel
Strand 5	B	404	410	anti-parallel
Strand 6	B	388	401	anti-parallel
Strand 7	B	439	449	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	229	237	parallel
Strand 3	C	248	255	anti-parallel
Strand 4	C	261	266	anti-parallel
Strand 5	C	297	301	parallel
Strand 6	C	289	292	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	242	first strand
Strand 2	C	248	255	anti-parallel
Strand 3	C	229	237	anti-parallel
Strand 4	C	282	286	anti-parallel
Strand 5	C	307	310	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	376	first strand
Strand 2	C	388	400	parallel
Strand 3	C	405	410	anti-parallel
Strand 4	C	418	422	anti-parallel
Strand 5	C	453	457	parallel
Strand 6	C	439	450	anti-parallel
Strand 7	C	463	466	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	376	first strand
Strand 2	C	388	400	parallel
Strand 3	C	439	450	anti-parallel
Strand 4	C	463	466	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	228	237	parallel
Strand 3	D	247	255	anti-parallel
Strand 4	D	261	266	anti-parallel
Strand 5	D	296	301	parallel
Strand 6	D	289	293	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	244	first strand
Strand 2	D	247	255	anti-parallel
Strand 3	D	228	237	anti-parallel
Strand 4	D	282	286	anti-parallel
Strand 5	D	307	310	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	376	first strand
Strand 2	D	388	401	parallel
Strand 3	D	404	410	anti-parallel
Strand 4	D	417	422	anti-parallel
Strand 5	D	455	457	parallel
Strand 6	D	439	446	anti-parallel
Strand 7	D	463	466	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	376	first strand
Strand 2	D	388	401	parallel
Strand 3	D	439	446	anti-parallel
Strand 4	D	463	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3U58

Analysis of interatomic Contacts of Structural Units in PDB entry:
3U58