Analysis of interatomic Contacts of Structural Units in PDB entry:
3U5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3U5M entry

There are 7 chains in PDB entry 3U5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 885	ALA 1087
B	PRO 885	ALA 1087
C	PRO 885	ALA 1087
D	PRO 885	ALA 1087
E	PRO 885	ALA 1087
F	ASN 886	ALA 1087
G	PRO 885	ARG 1084

There are 72 helices in PDB entry 3U5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	959	976	Right-handed alpha
Helix 2	2	A	978	983	Right-handed 310
Helix 3	3	A	992	997	Right-handed alpha
Helix 4	4	A	1002	1010	Right-handed alpha
Helix 5	5	A	1020	1045	Right-handed alpha
Helix 6	6	A	1061	1081	Right-handed alpha
Helix 7	7	B	959	976	Right-handed alpha
Helix 8	8	B	978	983	Right-handed 310
Helix 9	9	B	992	997	Right-handed alpha
Helix 10	10	B	1002	1009	Right-handed alpha
Helix 11	11	B	1020	1043	Right-handed alpha
Helix 12	12	B	1061	1081	Right-handed alpha
Helix 13	13	C	959	976	Right-handed alpha
Helix 14	14	C	978	983	Right-handed 310
Helix 15	15	C	992	997	Right-handed alpha
Helix 16	16	C	1002	1010	Right-handed alpha
Helix 17	17	C	1020	1042	Right-handed alpha
Helix 18	18	C	1061	1081	Right-handed alpha
Helix 19	19	D	959	976	Right-handed alpha
Helix 20	20	D	978	983	Right-handed 310
Helix 21	21	D	992	997	Right-handed alpha
Helix 22	22	D	1002	1010	Right-handed alpha
Helix 23	23	D	1020	1043	Right-handed alpha
Helix 24	24	D	1061	1081	Right-handed alpha
Helix 25	25	E	959	976	Right-handed alpha
Helix 26	26	E	978	983	Right-handed 310
Helix 27	27	E	992	997	Right-handed alpha
Helix 28	28	E	1002	1009	Right-handed alpha
Helix 29	29	E	1020	1045	Right-handed alpha
Helix 30	30	E	1061	1081	Right-handed alpha
Helix 31	31	F	959	976	Right-handed alpha
Helix 32	32	F	978	983	Right-handed 310
Helix 33	33	F	992	997	Right-handed alpha
Helix 34	34	F	1002	1010	Right-handed alpha
Helix 35	35	F	1020	1044	Right-handed alpha
Helix 36	36	F	1061	1081	Right-handed alpha
Helix 37	37	G	959	976	Right-handed alpha
Helix 38	38	G	977	983	Right-handed 310
Helix 39	39	G	992	997	Right-handed alpha
Helix 40	40	G	1002	1009	Right-handed alpha
Helix 41	41	G	1020	1043	Right-handed alpha
Helix 42	42	G	1061	1081	Right-handed alpha
Helix 43	43	H	959	975	Right-handed alpha
Helix 44	44	H	978	983	Right-handed 310
Helix 45	45	H	992	997	Right-handed alpha
Helix 46	46	H	1002	1010	Right-handed alpha
Helix 47	47	H	1020	1042	Right-handed alpha
Helix 48	48	H	1061	1081	Right-handed alpha
Helix 49	49	I	959	976	Right-handed alpha
Helix 50	50	I	978	983	Right-handed 310
Helix 51	51	I	992	997	Right-handed alpha
Helix 52	52	I	1002	1009	Right-handed alpha
Helix 53	53	I	1020	1043	Right-handed alpha
Helix 54	54	I	1062	1081	Right-handed alpha
Helix 55	55	J	959	976	Right-handed alpha
Helix 56	56	J	978	983	Right-handed 310
Helix 57	57	J	992	997	Right-handed alpha
Helix 58	58	J	1002	1010	Right-handed alpha
Helix 59	59	J	1020	1043	Right-handed alpha
Helix 60	60	J	1061	1081	Right-handed alpha
Helix 61	61	K	959	976	Right-handed alpha
Helix 62	62	K	978	983	Right-handed 310
Helix 63	63	K	992	997	Right-handed alpha
Helix 64	64	K	1002	1009	Right-handed alpha
Helix 65	65	K	1020	1043	Right-handed alpha
Helix 66	66	K	1061	1081	Right-handed alpha
Helix 67	67	L	959	976	Right-handed alpha
Helix 68	68	L	978	983	Right-handed 310
Helix 69	69	L	992	997	Right-handed alpha
Helix 70	70	L	1002	1010	Right-handed alpha
Helix 71	71	L	1020	1045	Right-handed alpha
Helix 72	72	L	1060	1081	Right-handed alpha

There are 12 sheets in PDB entry 3U5M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	900	901	first strand
Strand 2	A	908	909	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	900	901	first strand
Strand 2	B	908	909	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	908	909	first strand
Strand 2	C	899	901	anti-parallel
Strand 3	H	1084	1085	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	900	901	first strand
Strand 2	D	908	909	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1084	1085	first strand
Strand 2	E	899	901	anti-parallel
Strand 3	E	908	909	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	900	901	first strand
Strand 2	F	908	909	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	900	901	first strand
Strand 2	G	908	909	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	900	901	first strand
Strand 2	H	908	909	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	900	901	first strand
Strand 2	I	908	909	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	900	901	first strand
Strand 2	J	908	909	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	900	901	first strand
Strand 2	K	908	909	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	900	901	first strand
Strand 2	L	908	909	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3U5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
3U5M