Analysis of interatomic Contacts of Structural Units in PDB entry:
3U5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3U5N entry

There are 7 chains in PDB entry 3U5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 883ALA 1087
C
 ALA 1ARG 8
C
 SER 10SER 10
B
 ASP 883ALA 1087
D
 ALA 1ARG 8
D
 SER 10GLY 13
D
 ALA 15LEU 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3U5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
959 975Right-handed alpha
Helix 2
2
A
979 983Right-handed 310
Helix 3
3
A
992 997Right-handed alpha
Helix 4
4
A
1002 1011Right-handed alpha
Helix 5
5
A
1020 1046Right-handed alpha
Helix 6
6
A
1060 1081Right-handed alpha
Helix 7
7
B
959 976Right-handed alpha
Helix 8
8
B
979 983Right-handed 310
Helix 9
9
B
992 997Right-handed alpha
Helix 10
10
B
1002 1010Right-handed alpha
Helix 11
11
B
1020 1048Right-handed alpha
Helix 12
12
B
1060 1081Right-handed alpha
Helix 13
13
D
11 15Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3U5N. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
908 909first strand
Strand 2
A
897 901anti-parallel
Strand 3
C
2 6anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
908 909first strand
Strand 2
B
897 901anti-parallel
Strand 3
D
3 6anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il